Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0318
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0063 - 31391870-31392679                                         33   0.31 
01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231...    31   0.94 
01_01_0521 - 3826257-3826616,3826758-3826918,3826992-3827049,382...    29   2.9  
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072...    29   3.8  
01_06_1284 + 35994595-35995074                                         29   5.0  

>03_06_0063 - 31391870-31392679
          Length = 269

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 588 AERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDHNLKKHN 710
           A   T ASSD   N + +C  C + FP  + L  H  K ++
Sbjct: 150 ATSSTAASSDGMTNRVHRCSICQKEFPTGQALGGHKRKHYD 190


>01_06_0359 +
           28722524-28722613,28722794-28722863,28723062-28723159,
           28724029-28724167,28724243-28724370,28724500-28724592,
           28724707-28724757,28725405-28725470,28725568-28725633,
           28725900-28725977,28726248-28726427,28726502-28726577,
           28726660-28726823,28727569-28727931
          Length = 553

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 384 LIINYDPETSEELDWHIAASEEKETLSDQQCSETETVVQP 503
           L++ Y PE SEE+   ++A EEK  + +   +   T V P
Sbjct: 299 LLLTYKPEESEEIPEPVSAEEEKPQIEEPAVAVPSTEVVP 338


>01_01_0521 -
           3826257-3826616,3826758-3826918,3826992-3827049,
           3827426-3827497,3827582-3827639,3828231-3828347,
           3828630-3828782,3829182-3829346,3829814-3830132,
           3830276-3830780
          Length = 655

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 345 KLVSQSKLNTQNTLIINYDPETSEELDWHIAASEEKETLSDQQC 476
           KLV+ +  +T ++  + +DP  S+ L WH      +  LSD +C
Sbjct: 390 KLVNSTGGSTASSSHLVFDPSKSKRLSWHPRIFLYEGFLSDMEC 433


>07_03_1362 -
           26006159-26006461,26006691-26006841,26006975-26007212,
           26007293-26007503,26007631-26007755,26007895-26008023,
           26008540-26009326
          Length = 647

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +3

Query: 192 FHQILGDLQTVADFKLMYLCWECTGRLSNYIKF------KSQVRYAHKCLQDIEKDLKLV 353
           F  +  D Q VA  +L     +  G+L N +        K+ VR    CL++ EK   LV
Sbjct: 346 FKGVFPDGQEVAVKRLSNCSNQGLGQLKNELSLVAKLQHKNLVRLIGVCLEEGEK--VLV 403

Query: 354 SQSKLNTQNTLIINYDPETSEELDW 428
            +   N     ++ +DPE S++LDW
Sbjct: 404 YEYMPNKSLDTVL-FDPEKSKQLDW 427


>01_06_1284 + 35994595-35995074
          Length = 159

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 567 LTESDIEAERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDHNLKKHNKL 716
           L+ S   A      SS S    +F+C+ C + FP+ + L  H    H +L
Sbjct: 12  LSLSSPAASASQPTSSSSTTEGVFECKTCSKRFPSFQALGGHR-TSHTRL 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,170
Number of Sequences: 37544
Number of extensions: 256191
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)