Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0318
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 33 0.24
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 32 0.55
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016) 31 0.96
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.3
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.9
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.9
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.9
SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.9
SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30) 28 6.8
SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.8
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 9.0
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 28 9.0
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 33.1 bits (72), Expect = 0.24
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = +3
Query: 327 DIEKDLKLVSQSKLNTQNTLIINYDPETSEELDWHIAASEEKETLSDQQCSETETVVQPX 506
++E +LK K L+ N T +EL+ + ASE K + D+Q E +Q
Sbjct: 496 ELEAELKYTEHDKEGVNGELVTN--SRTIQELESKLEASESKRQILDEQHQSLELKIQQL 553
Query: 507 XXXXXXXXXXR--LMHLYKEIELTES 578
R H EIE+T S
Sbjct: 554 QEELFELKQQRDSFEHQITEIEVTHS 579
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHN 710
F+C++C E FP ++ LN H LK N
Sbjct: 342 FRCKECGELFPKEDKLNAHVLKHPN 366
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +3
Query: 477 SETETVVQPXXXXXXXXXXXRLMHLYKEIELTESDIEAERDTEASSDSFVNA----LFKC 644
S+ ET V+P R + + +I DI+ + + E V A +++C
Sbjct: 33 SDGETTVEPVPIFGDDEFYVREVEM--DISYVVDDIQKQANAEQQMADDVTACSKKIYQC 90
Query: 645 EKCVEAFPNKEDLNDHNLKKHN 710
++C + F DL H HN
Sbjct: 91 DQCSKTFTRPHDLRRHTKSIHN 112
>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 31.1 bits (67), Expect = 0.96
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHNK 713
+KC++C + F ++++NDH +K H K
Sbjct: 509 YKCQECGKGFARRDNMNDH-IKTHTK 533
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDH-NLKKHN 710
FKC KC F +KE+ ++H N+ K N
Sbjct: 336 FKCSKCPAEFRSKEERDEHSNMHKKN 361
>SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
Length = 413
Score = 31.1 bits (67), Expect = 0.96
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHNKLSG 722
F C +C F KE+ H+L+ HN L G
Sbjct: 147 FSCGQCKTIFKTKEEATRHDLESHNFLCG 175
>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLK 701
+KC++C + F + LNDH LK
Sbjct: 592 YKCQECGQEFARQSQLNDHRLK 613
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 573 ESDIEAERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDHNLKKHN 710
E D+ ++T + N +FKCE+C E P+ L H ++H+
Sbjct: 551 EEDLAKHKETHTT-----NMIFKCEQCDEYMPSHSKLLIHRKERHD 591
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDH 692
+KC++C AF NK L H
Sbjct: 680 YKCDQCTRAFKNKRQLTKH 698
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 30.7 bits (66), Expect = 1.3
Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 7/178 (3%)
Frame = +3
Query: 207 GDLQTVADFKLMYLCWECTGRLSNYIKFKSQVRYAHKCLQDIEKDLKLVSQ-SKLNTQNT 383
GD + + ++ C C ++ H E D K+ S SK
Sbjct: 1293 GDAASTTGNQKLFKCDICEKEFKTHVGLNFHRSIRHGINTRKESDGKVASTASKHKLFKC 1352
Query: 384 LIINYDPETSEELDWHIAASEEKETL--SDQQCSETETVVQPXXXXXXXXXXXRLMHLYK 557
++ + T L H A K T+ S C T T +QP R
Sbjct: 1353 VLCKREYNTHRGLACHRAIKHRKATVKKSTMACFGTNTRLQPKITHRKSAKSGRTKSRVA 1412
Query: 558 EI--ELTESDIEAERDTEASSDSFVNA--LFKCEKCVEAFPNKEDLNDHNLKKHNKLS 719
+ +T + E +S S V + +F+CE C + + + L H +H K S
Sbjct: 1413 KPTPHITPDAPQTYEKGENASTSKVRSQEMFQCESCKKVYNTERGLKYHRALQHWKPS 1470
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 549 LYKEIELTESDIEAERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDHN 695
LY ++E +D + SS + N+L KCEKC F + ++ H+
Sbjct: 1613 LYSDLEEVSTDSISLFIRHLSS-TIANSLLKCEKCKRRFVGEYEMAKHD 1660
>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 618
Score = 29.5 bits (63), Expect = 2.9
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Frame = +3
Query: 387 IINYDPETSEELDWHI--AASEEKE--TLSDQQCSETETVVQPXXXXXXXXXXXRLMHLY 554
I++++P E + I A + EKE TL Q +E V+P + L
Sbjct: 38 ILSWEPLDMSEYEHEIETAHNVEKELNTLLMPQPAEQVQPVRPAPRKPEKLALVQPFFLQ 97
Query: 555 K--EIELTESDIEAERDTEA-SSDSFVNALFKCEKCVEAFPNKEDLNDHNL 698
K + E + D+EA S++ FKC +C +F + +L H+L
Sbjct: 98 KTGKSYANEQPDTRDHDSEAKSAEKLSEKPFKCNECSASFIRRSELQHHSL 148
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 633 LFKCEKCVEAFPNKEDLNDHNLKKHNK 713
++KC C + F +KE DH + H K
Sbjct: 186 VYKCPHCKKVFSDKEKRKDHYISAHKK 212
>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 594
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKH 707
FKCE C + FP + +L +H ++KH
Sbjct: 294 FKCEMCEQDFPGQTELAEH-VRKH 316
>SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 633 LFKCEKCVEAFPNKEDLNDHNLKKHNK 713
LFKC+KC + F + + H HNK
Sbjct: 251 LFKCDKCDKDFKTERSVRRHKRTVHNK 277
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHN 710
FKC+KC +F N L +H HN
Sbjct: 129 FKCDKCWWSFKNPSGLREHIKAVHN 153
>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 921
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 585 EAERDTEASSDSFVNALFK--CEKCVEAFPNKEDLNDH 692
EA TE + D L+K CEKC + F + L DH
Sbjct: 490 EAANSTELTEDGSEKLLYKIPCEKCGKLFKERRFLVDH 527
>SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 627 NALFKCEKCVEAFPNKEDLNDHNLKKHNK 713
N F+CEKC ++F N++D +++K+N+
Sbjct: 222 NQSFQCEKCEKSF-NRKDTFKRHMRKYNQ 249
>SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)
Length = 824
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 603 EASSDSFVNALFKCEKCVEAFPNKEDLNDHNLKKHNKL 716
E +S + KCEKC + FP L H+ + H +L
Sbjct: 643 EQTSSKETDTGCKCEKCGKIFPRTCGLKRHDNRVHKRL 680
>SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 336
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 627 NALFKCEKCVEAFPNKEDLNDHNLKKH 707
N ++C+ C + F K DL HN+ H
Sbjct: 305 NLPYQCKTCRKKFEKKTDLKQHNMDIH 331
>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 627 NALFKCEKCVEAFPNKEDLNDHNLKKHNK 713
N F+CEKC ++ N++D ++KK+N+
Sbjct: 520 NQSFQCEKCEQSL-NRKDTFKRHMKKYNQ 547
>SB_34420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 544
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 639 KCEKCVEAFPNKEDLNDHNLKKH 707
KC++C +AF K L +H L H
Sbjct: 260 KCQECSKAFSRKSHLRNHILSMH 282
>SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 777
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 555 KEIELTESDIEAERDTEASSDSF-VNALFKCEKCVEAFPNKEDLNDH 692
KEI++ + + S+DS +KC++C + F K +L H
Sbjct: 441 KEIKMADQSRGEKSPENTSNDSLRTEKTYKCDECGKCFNRKTNLKRH 487
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKH 707
F+CE C F K L+ H +KH
Sbjct: 960 FQCEVCARQFKEKSSLSKHIKRKH 983
>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
Length = 957
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 288 FKSQVRYAHKCLQDIEKDLKLVSQSKLNTQNTLIIN 395
F S+++Y CL+D +K + + ++ + N+ +IN
Sbjct: 39 FSSKIQYFRNCLEDAQKIISSLQKAYKDDMNSDVIN 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,784,154
Number of Sequences: 59808
Number of extensions: 323287
Number of successful extensions: 1236
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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