Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0318
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032644-6|CAA21671.1| 574|Caenorhabditis elegans Hypothetical ... 33 0.21
AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical... 31 0.64
Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z66565-5|CAA91482.2| 766|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL023828-25|CAD56605.1| 167|Caenorhabditis elegans Hypothetical... 30 1.5
AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein. 29 2.6
AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein. 29 2.6
AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1 suppres... 29 2.6
AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical ... 29 2.6
AL021474-6|CAI79259.1| 261|Caenorhabditis elegans Hypothetical ... 29 3.4
Z81489-11|CAJ30223.1| 323|Caenorhabditis elegans Hypothetical p... 29 4.5
U00049-2|AAC47052.2| 327|Caenorhabditis elegans Serpentine rece... 29 4.5
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 28 5.9
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 28 5.9
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 28 5.9
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 28 5.9
AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical ... 28 5.9
U13644-5|AAB52681.1| 451|Caenorhabditis elegans Hypothetical pr... 28 7.8
U13644-1|AAB52683.1| 437|Caenorhabditis elegans Hypothetical pr... 28 7.8
S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein. 28 7.8
S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein. 28 7.8
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 28 7.8
AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical... 28 7.8
>AL032644-6|CAA21671.1| 574|Caenorhabditis elegans Hypothetical
protein Y51H1A.6 protein.
Length = 574
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHNKLSGVR 728
FKC +C + FP + L DH +K+H+ + VR
Sbjct: 259 FKCAECGDGFPVMDRLCDHMIKQHDCQTNVR 289
>AF039710-10|AAB96693.2| 393|Caenorhabditis elegans Hypothetical
protein C46E10.9 protein.
Length = 393
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 624 VNALFKCEKCVEAFPNKEDLNDH 692
VN FKCE C + F NK +LN H
Sbjct: 206 VNRQFKCEICEKQFANKPNLNRH 228
>Z71266-8|CAA95846.2| 729|Caenorhabditis elegans Hypothetical
protein R06C7.9 protein.
Length = 729
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 615 DSFVNALFKCEKCVEAFPNKEDLNDHNL 698
+S +F+C C E PN L+DHN+
Sbjct: 651 ESHGKEMFQCNNCSETLPNYRALHDHNM 678
>Z66565-5|CAA91482.2| 766|Caenorhabditis elegans Hypothetical
protein T04F8.6 protein.
Length = 766
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 258 CTGRLSNYI-KFKSQVRYAHKCLQDIEKDLKLVSQSKLNTQNTL 386
C GR++ KF+ + K +++IEKDL LV Q++ + +N L
Sbjct: 318 CRGRIAAMEEKFRMERHEMQKEIENIEKDLSLVRQNETSLKNKL 361
>AL023828-25|CAD56605.1| 167|Caenorhabditis elegans Hypothetical
protein Y17G7B.22 protein.
Length = 167
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 633 LFKCEKCVEAFPNKEDLNDHNLKKH 707
LF C+KC+ AF + DL++H H
Sbjct: 63 LFACQKCMSAFHAESDLSNHEQLTH 87
>AF519108-1|AAM74222.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHN 710
FKC++C A ++ L +H +K HN
Sbjct: 652 FKCDQCEYASSRRDKLKEHIIKHHN 676
>AF502568-1|AAM74151.1| 909|Caenorhabditis elegans EOR-1 protein.
Length = 909
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHN 710
FKC++C A ++ L +H +K HN
Sbjct: 652 FKCDQCEYASSRRDKLKEHIIKHHN 676
>AF100669-8|AAK39268.1| 909|Caenorhabditis elegans Egl-1
suppressor/dio uptake defective/raf enhancer protein 1
protein.
Length = 909
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHN 710
FKC++C A ++ L +H +K HN
Sbjct: 652 FKCDQCEYASSRRDKLKEHIIKHHN 676
>AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical
protein F12E12.5 protein.
Length = 330
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 624 VNALFKCEKCVEAFPNKEDLNDHNL 698
VN F+CE C + F NK +L H +
Sbjct: 59 VNHKFRCENCEKQFTNKPNLKRHQI 83
>AL021474-6|CAI79259.1| 261|Caenorhabditis elegans Hypothetical
protein Y32F6A.6 protein.
Length = 261
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +3
Query: 537 RLMHLYKEIELTESD-IEAERD----TEASSDSFVNALFKCEKCVEAFPNKEDLNDHNLK 701
++ H+Y+E + + EA+R T++++ V FK E+ FPN E+LN+ +
Sbjct: 27 KMKHIYREYAILDGQAFEAQRYYEQLTKSNNLEQVRDSFKAEEIEADFPNLEELNNTDEA 86
Query: 702 KHNKL 716
+ + L
Sbjct: 87 REHAL 91
>Z81489-11|CAJ30223.1| 323|Caenorhabditis elegans Hypothetical
protein C55A1.14 protein.
Length = 323
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = -2
Query: 605 FCIPLGLYVTLSQLYLFVQ-MHQSLALRSFL-YLLFWL 498
+ +P+ L++T LY+F+Q H + L +FL ++L++L
Sbjct: 90 YLLPIALFLTFYTLYIFIQSFHLLMFLLAFLKFVLYFL 127
>U00049-2|AAC47052.2| 327|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 2 protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 566 LYLFVQMHQSLALRSFLYLLFWLHYCFCF*TLLIGECF 453
LY+ + H++L L+ Y+LF + CF TL++ + F
Sbjct: 52 LYILLWKHRNLYLKQSFYILFIMSCIACF-TLVVQDIF 88
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 255 ECTGRLSNYIKFKSQVRYAHKCLQDIEKDLKLVSQSKLNTQNTLIINYDPETSEELDWHI 434
E RL++YI+ +VR+ + +EKDL L+ + ++ + Y+ E D
Sbjct: 76 ELNDRLASYIE---KVRFLEAQNRKMEKDLNLLRGKWGHDSTSVKVMYETELRSAKDLIA 132
Query: 435 AASEEKETLSDQ 470
+ +E+ L DQ
Sbjct: 133 DSDKERAQLEDQ 144
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +3
Query: 255 ECTGRLSNYIKFKSQVRYAHKCLQDIEKDLKLVSQSKLNTQNTLIINYDPETSEELDWHI 434
E RL++YI+ +VR+ + +EKDL L+ + ++ + Y+ E D
Sbjct: 57 ELNDRLASYIE---KVRFLEAQNRKMEKDLNLLRGKWGHDSTSVKVMYETELRSAKDLIA 113
Query: 435 AASEEKETLSDQ 470
+ +E+ L DQ
Sbjct: 114 DSDKERAQLEDQ 125
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 630 ALFKCEKCVEAFPNKEDLNDHNLKKHN 710
++F C C +AFPN E L H + H+
Sbjct: 26 SIFTCVMCSKAFPNAEALQIHTDQVHD 52
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 630 ALFKCEKCVEAFPNKEDLNDHNLKKHN 710
++F C C +AFPN E L H + H+
Sbjct: 144 SIFTCVMCSKAFPNAEALQIHTDQVHD 170
>AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical
protein Y5F2A.4 protein.
Length = 454
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHNKLSGVRV 731
+ C C E F K L H +KH+ GV V
Sbjct: 71 YSCTFCEEKFVQKSHLTRHVSRKHSNAPGVEV 102
>U13644-5|AAB52681.1| 451|Caenorhabditis elegans Hypothetical
protein F56D2.2 protein.
Length = 451
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 603 EASSDSFVNALFKCEKCVEA 662
EA+ + FVN LF CE C ++
Sbjct: 173 EAAEEHFVNTLFDCEVCYDS 192
>U13644-1|AAB52683.1| 437|Caenorhabditis elegans Hypothetical
protein F56D2.5 protein.
Length = 437
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 591 ERDTEASSDSFVNALFKCEKCVEA 662
+++ EA + FVN L+ C+ C E+
Sbjct: 167 QKEEEAVEEQFVNTLYDCQVCFES 190
>S66936-1|AAB28820.1| 360|Caenorhabditis elegans Egl-43 protein.
Length = 360
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHNK 713
F+C+KC F + +L D +LKKH +
Sbjct: 317 FRCQKCERCFGQQTNL-DRHLKKHEQ 341
>S66757-1|AAB28819.1| 581|Caenorhabditis elegans Egl-43 protein.
Length = 581
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHNK 713
F+C+KC F + +L D +LKKH +
Sbjct: 538 FRCQKCERCFGQQTNL-DRHLKKHEQ 562
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHNKLSGVR 728
+KC C + + L++H + H K+S V+
Sbjct: 271 YKCTYCSKRYKTSSGLSNHMMSSHQKISDVQ 301
>AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical
protein Y22D7AL.16 protein.
Length = 233
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 636 FKCEKCVEAFPNKEDLNDHNLKKH 707
F C +C +AF + +L +H +K H
Sbjct: 55 FNCRQCRKAFDSIRELAEHEIKNH 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,299,808
Number of Sequences: 27780
Number of extensions: 260051
Number of successful extensions: 1050
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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