Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0318
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    31   0.015
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   5.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   9.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.0  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 30.7 bits (66), Expect = 0.015
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHNKL 716
           FKCEKC  +  NK  LN H LK H+ +
Sbjct: 17  FKCEKCSYSCVNKSMLNSH-LKSHSNV 42


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 636 FKCEKCVEAFPNKEDLNDHNLKKHNK 713
           ++CE C ++F  KE+L+ H  + H K
Sbjct: 120 YQCEYCSKSFSVKENLSVHR-RIHTK 144


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 6/13 (46%), Positives = 13/13 (100%)
 Frame = +3

Query: 135 GCLSIGRKMIKID 173
           GCL++GR+++++D
Sbjct: 216 GCLTLGRRILRLD 228


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 633 LFKCEKCVEAFPNKEDLNDHNLKKH 707
           LF C+ C +   +K  L  H   KH
Sbjct: 5   LFTCQLCGKVLCSKASLKRHVADKH 29


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 375 QNTLIINYDPET 410
           + T+++NY+PET
Sbjct: 412 RKTIMVNYNPET 423


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 186 ECFHQILGDLQTVAD 230
           +C H++LG +  +AD
Sbjct: 335 DCIHELLGHMPLLAD 349


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 4   FHWHLVY 24
           +HWHLVY
Sbjct: 210 WHWHLVY 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,561
Number of Sequences: 438
Number of extensions: 3427
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)