Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0318
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15200.1 68414.m01817 protein-protein interaction regulator f... 31 1.0
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ... 30 1.4
At5g54630.1 68418.m06802 zinc finger protein-related contains Pr... 30 1.8
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ... 30 1.8
At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein ... 29 4.2
At5g46560.1 68418.m05733 expressed protein 28 5.6
At5g27630.1 68418.m03310 acyl-CoA binding family protein similar... 28 5.6
At5g38880.1 68418.m04702 expressed protein 28 7.3
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma... 28 7.3
At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4 ... 28 7.3
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 28 7.3
At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein ... 27 9.7
At3g31540.1 68416.m04025 hypothetical protein 27 9.7
>At1g15200.1 68414.m01817 protein-protein interaction regulator
family protein contains Pfam PF04696: pinin/SDK/memA/
protein conserved region
Length = 423
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 234 KLMYLCW-ECTGRLSNYIKFKSQVRYAHKCLQDIEKDLKLVSQSKLNT 374
+L++L W E +LSN+I+ K++ R + ++ +E+D V Q K T
Sbjct: 243 ELLFLQWSEHQKKLSNFIRTKAEPRIYYAPVKPLEEDTSEVEQQKERT 290
>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 257
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 579 DIEAERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDH 692
D + E+D + D+ N F+C C FP + L H
Sbjct: 76 DKDKEKDKDKDKDNNNNRRFECHYCFRNFPTSQALGGH 113
>At5g54630.1 68418.m06802 zinc finger protein-related contains
Prosite:PS00028 Zinc finger, C2H2 type, domain
Length = 472
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 570 TESDIEAERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDHNLKKH 707
T + E + E++ + N+ C KC E F E H+L KH
Sbjct: 209 TNRRVSLEMNRESTINGGNNSSVSCHKCGEQFNKLEAAEAHHLSKH 254
>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 314
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 555 KEIELTESDIEAERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDHNLK-KHNK 713
K+ + E D E + D+E S FKCE C + F + + L H K NK
Sbjct: 168 KKKQRVEED-ETDHDSEDYKSSKSRGRFKCETCGKVFKSYQALGGHRASHKKNK 220
>At4g27240.1 68417.m03911 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 431
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 591 ERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDHNLKKH 707
E D EA+ + N+ C KC E F E H+L KH
Sbjct: 182 ENDREAAINGD-NSSVSCHKCGEKFSKLEAAEAHHLTKH 219
>At5g46560.1 68418.m05733 expressed protein
Length = 378
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 123 IVCCGCLSIGRKMIKIDLERKECFHQILGDL-QTVADF 233
+V C + +G M++ ++RK+CF + + +L V DF
Sbjct: 226 VVLCNGILVGSAMLRRRIQRKQCFSRRVEELYDQVCDF 263
>At5g27630.1 68418.m03310 acyl-CoA binding family protein similar to
RING finger rngB protein, cytosolic - Dictyostelium
discoideum, PIR:S68824; contains Pfam profiles PF01344:
Kelch motif, PF00887: Acyl CoA binding protein (ACBP)
Length = 648
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 570 TESDIEAERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDHNLKK 704
T DIE+E E +D + L ++ VEA NKE + LK+
Sbjct: 511 TTRDIESEIKVEGKADRIITTLKSEKEEVEASLNKEKIQTLQLKE 555
>At5g38880.1 68418.m04702 expressed protein
Length = 796
Score = 27.9 bits (59), Expect = 7.3
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Frame = +3
Query: 282 IKFKSQVRYAHKC-LQDIEK--DLKLVSQSKLNTQNTLIIN-------YDPETSEELDWH 431
++F +VR + C L+D+ K DL + Q + + ++L+ + Y+ T+ LD
Sbjct: 658 LEFCLRVRGSEACVLEDLAKAIDLVHIRQDLVESGHSLLDHAFRAQQKYERTTNYCLD-- 715
Query: 432 IAASEEKETLSDQQCSETETVVQ 500
ASE++ T+SDQ E T VQ
Sbjct: 716 -LASEQENTISDQWLPELRTAVQ 737
>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
domain-containing protein similar to SEX1 (starch
excess) [Arabidopsis thaliana] GI:12044358; contains
Pfam profile PF00686: Starch binding domain
Length = 1191
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 479 RNRNSSATKKEDKESFEEQETD 544
R SSATKK DK S +++TD
Sbjct: 806 RTSKSSATKKTDKNSLSKKKTD 827
>At3g15620.1 68416.m01981 6-4 photolyase (UVR3) identical to 6-4
photolyase (UVR3) GB:AB003687 [Arabidopsis thaliana]
(Nucleic Acids Res. 26 (2), 638-644 (1998))
Length = 556
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 270 LSNYIKFKS-QVRYAHKCLQDIEKDLK 347
+S Y+KF RY ++CLQ+I KD+K
Sbjct: 279 MSPYLKFGCLSSRYFYQCLQNIYKDVK 305
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +3
Query: 546 HLYKEIELTESDIEAERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDHNLKKHNKLSG 722
H K +L + +A T + S + KC+ C FP + L H + + L G
Sbjct: 215 HSIKAAQLENAGADAGEKTRSKMLSPSGKIHKCDICHVLFPTGQALGGHKRRHYEGLLG 273
>At5g15480.1 68418.m01812 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 402
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +3
Query: 588 AERDTEASSDSFVNALFKCEKCVEAFPNKEDLNDHNLKKH 707
+++ T+ S + LF+CE+C + F ++ +H H
Sbjct: 48 SKKKTQESPEPMKKILFRCEECGKGFRYEKYFKNHRSMMH 87
>At3g31540.1 68416.m04025 hypothetical protein
Length = 699
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 558 EIELTE--SDIEAERDTEASSDSFVNALFKCEKCVEAFPNKED 680
E+ LT + +E +R ++ +D F +L K K +E FP K+D
Sbjct: 223 EVTLTHLRNYLEIQRVPKSEADRFYISLAKNMKIIEGFPCKDD 265
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,250,670
Number of Sequences: 28952
Number of extensions: 232876
Number of successful extensions: 691
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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