Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0317
(612 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 334 9e-91
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 322 4e-87
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 321 9e-87
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 241 7e-63
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 235 6e-61
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 233 3e-60
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 198 6e-50
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 190 2e-47
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 190 3e-47
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 189 4e-47
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 167 2e-40
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 147 2e-34
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 146 5e-34
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 124 2e-27
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 123 4e-27
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 80 5e-14
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 66 6e-10
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 65 1e-09
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 64 3e-09
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 62 8e-09
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 62 8e-09
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 62 8e-09
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 62 1e-08
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 59 9e-08
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 59 9e-08
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 58 1e-07
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 55 2e-06
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 55 2e-06
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 52 1e-05
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 50 6e-05
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 48 2e-04
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 48 2e-04
UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 46 7e-04
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 45 0.001
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 44 0.002
UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyc... 42 0.009
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 41 0.027
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 40 0.062
UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.3
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 3.1
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 4.0
UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;... 33 5.3
UniRef50_UPI0001552B57 Cluster: PREDICTED: hypothetical protein;... 32 9.3
UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;... 32 9.3
UniRef50_A1TZN4 Cluster: Flagellar hook-associated protein FlgK;... 32 9.3
UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4; Actin... 32 9.3
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 334 bits (821), Expect = 9e-91
Identities = 156/198 (78%), Positives = 176/198 (88%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 378
FPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++
Sbjct: 61 FPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKD 120
Query: 379 IPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 558
IPGLTD V RRLGPKRAS IRKL+NL KEDDVR+YVVKR LP K+GK KPR KAPKI
Sbjct: 121 IPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK---KPRTKAPKI 177
Query: 559 QRLVTPVVLQRRRHRLAL 612
QRL+TPVVLQR+RHRLA+
Sbjct: 178 QRLITPVVLQRKRHRLAI 195
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 322 bits (791), Expect = 4e-87
Identities = 149/198 (75%), Positives = 169/198 (85%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 378
FPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+
Sbjct: 61 FPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQD 120
Query: 379 IPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 558
IPGLTD +PRRLGPKR KIRK+FNL KEDDVR+YV++R LP KEGK K + KAPKI
Sbjct: 121 IPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKI 177
Query: 559 QRLVTPVVLQRRRHRLAL 612
QRLVTPVVLQR+R RLAL
Sbjct: 178 QRLVTPVVLQRKRKRLAL 195
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 321 bits (788), Expect = 9e-87
Identities = 156/198 (78%), Positives = 173/198 (87%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 378
FPMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120
Query: 379 IPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 558
IPGLTD VPRRLGPKRAS+IRKLFNL KEDDVR+YVV++ L KEGK KPR KAPKI
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEGK---KPRTKAPKI 176
Query: 559 QRLVTPVVLQRRRHRLAL 612
QRLVTP VLQ +R R+AL
Sbjct: 177 QRLVTPRVLQHKRRRIAL 194
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 241 bits (591), Expect = 7e-63
Identities = 117/195 (60%), Positives = 146/195 (74%), Gaps = 3/195 (1%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MK N+SYP TG QK E+ D+ K IF++KRMG VEAD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 378
FPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA E
Sbjct: 61 FPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANE 120
Query: 379 IPGLTDGNVPRRLGPKRASKIRKLFNLXKEDD---VRRYVVKRVLPAKEGKENAKPRHKA 549
I GLTD NVPRRLGPKR +K+R+LF K D V++ +++R K+GK+ R KA
Sbjct: 121 IAGLTDQNVPRRLGPKRLTKLRRLFGFKKADGVAIVQKNLIRRTWTTKDGKK----RQKA 176
Query: 550 PKIQRLVTPVVLQRR 594
PKIQRLVT L+R+
Sbjct: 177 PKIQRLVTESRLRRK 191
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 235 bits (575), Expect = 6e-61
Identities = 113/196 (57%), Positives = 143/196 (72%), Gaps = 3/196 (1%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MK N+SYP TG QK E+ D+ K IF +K+MG EVE D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 378
FPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+KG E
Sbjct: 61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120
Query: 379 IPGLTDGNVPRRLGPKRASKIRKLFNLXKEDD---VRRYVVKRVLPAKEGKENAKPRHKA 549
I GLT +PR+LGPKRA+ I+KLF L KEDD +++ V++R +GK+ R K
Sbjct: 121 IDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKD----RTKC 176
Query: 550 PKIQRLVTPVVLQRRR 597
PKIQRL+TP + R++
Sbjct: 177 PKIQRLITPERILRKK 192
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 233 bits (569), Expect = 3e-60
Identities = 117/197 (59%), Positives = 140/197 (71%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGNDKQG
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 378
FPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG E
Sbjct: 102 FPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNE 161
Query: 379 IPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 558
IPGLTD V ++LGPKRA+KIRKLFNL K DDVR+YV+ R + +N K R PKI
Sbjct: 162 IPGLTDKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI-----SKNGKNRFIKPKI 216
Query: 559 QRLVTPVVLQRRRHRLA 609
QRLVT L R+R +A
Sbjct: 217 QRLVTEKRLLRKRTLIA 233
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 198 bits (484), Expect = 6e-50
Identities = 106/179 (59%), Positives = 125/179 (69%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG VEAD LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 378
FPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS- 118
Query: 379 IPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 555
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 119 ---------PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 190 bits (464), Expect = 2e-47
Identities = 86/159 (54%), Positives = 120/159 (75%)
Frame = +1
Query: 22 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 201
K+NV+YPATG K F+ +E R F +KR+G EV+A LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 202 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 381
PM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI
Sbjct: 61 PMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEI 120
Query: 382 PGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKR 498
G+T+ +P R GP+RAS RKLFNL ++DDV+++V++R
Sbjct: 121 EGVTNDALPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 190 bits (462), Expect = 3e-47
Identities = 93/197 (47%), Positives = 131/197 (66%), Gaps = 1/197 (0%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
M++ ++YP G Q + ++ D L YEKR+G ++E ++LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 378
FPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +E
Sbjct: 61 FPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKE 120
Query: 379 IPGLTDGNVPRRLGPKRASKIRKLFNL-XKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 555
I GLT VPRR GPKRAS +R +F + + D + V+KR K GK +PK
Sbjct: 121 IDGLTTTAVPRRFGPKRASTLRAMFGITDSKFDASKLVLKR--EVKPGK------FTSPK 172
Query: 556 IQRLVTPVVLQRRRHRL 606
+QRL+T + R+ L
Sbjct: 173 VQRLITARRVARKNRML 189
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 189 bits (461), Expect = 4e-47
Identities = 100/195 (51%), Positives = 134/195 (68%), Gaps = 3/195 (1%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 195
MKLN++YP G K FE+ DE R+ + R+G EV+ G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 196 GFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLALVIVRKG 369
GFPM GVL +SRV LL+ +G + R GER+RK+VRGC++ ++++++ + I + G
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVG 120
Query: 370 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKA 549
Q I G+TD PRRLGPKRASKIRKLFNL + +DVR+YVV+R + K GK K R KA
Sbjct: 121 DQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRV-VKSGK---KDRLKA 176
Query: 550 PKIQRLVTPVVLQRR 594
PKIQRL+TP V RR
Sbjct: 177 PKIQRLITPRVKARR 191
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 167 bits (405), Expect = 2e-40
Identities = 90/201 (44%), Positives = 125/201 (62%), Gaps = 5/201 (2%)
Frame = +1
Query: 22 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 201
K+N+S P TG K + D K + + RM +E + LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 202 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 381
PM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+V G + +
Sbjct: 68 PMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTL 127
Query: 382 PGLTDGNVPRRLGPKRASKIRKLFNL--XKEDDVRRYVVKRV---LPAKEGKENAKPRHK 546
PGLTD VP+RL PKRASKIR+LF L K D + +V + L + +N + + K
Sbjct: 128 PGLTDVVVPKRLVPKRASKIRRLFGLPTTKVDPKDQMLVCELIKELGHEVTLKNGEKKLK 187
Query: 547 APKIQRLVTPVVLQRRRHRLA 609
PK+QR+VT R++ +A
Sbjct: 188 YPKVQRVVTDEKYARKQRVIA 208
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 147 bits (356), Expect = 2e-34
Identities = 78/198 (39%), Positives = 123/198 (62%), Gaps = 2/198 (1%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MK N++ P+TG Q E+ DE KLRI Y K++ ++++ +G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 372
FPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +SVL + ++
Sbjct: 61 FPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLLTNKN 120
Query: 373 QEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKAP 552
++ +T+ N + L KR+S +RK+ L K DD+R++ +K AK+ K
Sbjct: 121 DDLL-ITNKNSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK---IAKDFKNKV------- 169
Query: 553 KIQRLVTPVVLQRRRHRL 606
KIQRL+TP+ +Q+++ +
Sbjct: 170 KIQRLITPIKIQKKKENI 187
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 146 bits (353), Expect = 5e-34
Identities = 82/144 (56%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
Frame = +1
Query: 169 RVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLA 348
R GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLA
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLA 115
Query: 349 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKE-GKE 525
L +V+KGA EI GLTD NVPRRLGPKR +K+R+LF K D RV+ ++E G +
Sbjct: 116 LQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKAD--------RVISSEEHGPQ 167
Query: 526 N-AKPRHKAPKIQRLVTPVVLQRR 594
K R KAPKIQRLVT L+R+
Sbjct: 168 RYGKKRQKAPKIQRLVTESRLRRK 191
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 124 bits (298), Expect = 2e-27
Identities = 65/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Frame = +1
Query: 61 LFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVR 240
+FE+ +++R+ Y+K++G + + LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 241 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLG 420
L+SKG + YR RR G R+RKSVRG IV + VL L+I+R G +EI GLT+
Sbjct: 60 PLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHL 119
Query: 421 PKRASKIRKLFNLXKEDDVRRYVVKRVLPAK--EGKENAKPRHKAPKIQR 564
P++ K+RK+F + E+ ++ +L ++ + K+ K RH +++R
Sbjct: 120 PRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRHNGKRMKR 169
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 123 bits (296), Expect = 4e-27
Identities = 53/77 (68%), Positives = 64/77 (83%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 199 FPMKQGVLTNSRVRLLM 249
FPMKQ VLT+ R+ LL+
Sbjct: 61 FPMKQDVLTHDRIHLLL 77
Score = 61.3 bits (142), Expect = 2e-08
Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Frame = +1
Query: 373 QEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDD-----VRRYVVKRVLP-AKEGKENAK 534
++IPGLTD PR +GPKRAS+IRKLFNL KEDD + R + KR+ KE KE K
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKE--K 137
Query: 535 PRHKAPKIQRL 567
+ + K QRL
Sbjct: 138 RQEQIAKRQRL 148
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 79.8 bits (188), Expect = 5e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWK 156
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 66.1 bits (154), Expect = 6e-10
Identities = 66/200 (33%), Positives = 99/200 (49%), Gaps = 3/200 (1%)
Frame = +1
Query: 22 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 201
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 202 PMKQGVLTNSRVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 378
MKQ VL + RV LL++ HS Y+P R E S++ V +S+L +VI+ G ++
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRKD 109
Query: 379 IPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAK--EGKENAKPRHKAP 552
IPG T +R PKR +I+ F++ +K VL K + K++ KPR K
Sbjct: 110 IPGQT-----KRWAPKRWRRIQS-FSVS---------LKTVLSTKKPQNKDSKKPRPKTH 154
Query: 553 KIQRLVTPVVLQRRRHRLAL 612
K+Q +P + Q + + L
Sbjct: 155 KVQH--SPHIRQHKAQLITL 172
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 64.9 bits (151), Expect = 1e-09
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Frame = +1
Query: 13 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLG---DEWKGYV------ 165
A KL +S P G K E+ ++ +R+G E+ A +LG E G
Sbjct: 2 ATFKLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADAK 60
Query: 166 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVL 345
L++ GG DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+ +
Sbjct: 61 LKITGGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQV 119
Query: 346 ALVIV 360
+ IV
Sbjct: 120 NMKIV 124
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 64.1 bits (149), Expect = 3e-09
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Frame = +1
Query: 13 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL--------GDEWKGYV- 165
A KL +S P +G K E+ ++ KR+G ++ A +L G E+ V
Sbjct: 2 ATFKLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDVK 60
Query: 166 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 315
L + GG DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 61 LEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 62.5 bits (145), Expect = 8e-09
Identities = 43/108 (39%), Positives = 59/108 (54%)
Frame = +1
Query: 232 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 411
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 412 RLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 555
RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 68 RLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 62.5 bits (145), Expect = 8e-09
Identities = 33/91 (36%), Positives = 55/91 (60%)
Frame = +1
Query: 109 RMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG 288
++G E LG KGY LR+ GG+DK GFPMK+ V R + L++ G + ++P + G
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKG 86
Query: 289 ERKRKSVRGCIVDANLSVLALVIVRKGAQEI 381
R+RK+VRG + ++S + + + +G Q +
Sbjct: 87 LRRRKTVRGNTIADDISQINVKVSERGEQTL 117
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 62.5 bits (145), Expect = 8e-09
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Frame = +1
Query: 31 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFP 204
+S P TG QK+ E + ++L K++G +V + + D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFP 62
Query: 205 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 369
M+ + +R RLL+S G +RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 63 MRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 62.1 bits (144), Expect = 1e-08
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Frame = +1
Query: 58 KLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTNS 231
K F++ ++ R F KR+G V A LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 232 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 366
+ R L+S G + PR GER+RK+VRG + ++ + IV++
Sbjct: 193 KKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ 236
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 58.8 bits (136), Expect = 9e-08
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MK+N++ P G Q + DE I K +G +E LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 372
F +K+ + T R+++ + KG R +R K+++VRG I+ + +S + LV +
Sbjct: 60 FLLKKNLNTFERLKINVKKGSLGNRSHFKRKNLTKKRTVRGGILSSEISSINLVKLPNNV 119
Query: 373 QEIPGLTDGNVPRRLGPKRASKIRKLF 453
+E + ++L KR +K++ LF
Sbjct: 120 KE--SSVFPSKEQKLA-KRVTKLKTLF 143
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 58.8 bits (136), Expect = 9e-08
Identities = 39/126 (30%), Positives = 66/126 (52%)
Frame = +1
Query: 13 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 192
A ++ V+ P +G FEV D F + +GA V+ +G + GY + + GG+D
Sbjct: 2 ATFQVAVADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDD 58
Query: 193 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 372
G PM++ V + + +L+ +G + + P DGERKR +VRG V ++ L + I G
Sbjct: 59 AGRPMREDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEHGE 117
Query: 373 QEIPGL 390
+ + L
Sbjct: 118 EPVAEL 123
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 58.4 bits (135), Expect = 1e-07
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Frame = -1
Query: 489 DITTYIIFFXKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQDREIGVNNTST 310
D+ +IFF + E+LT+ T T + I ++R+ L N++ Q + ++ +T
Sbjct: 95 DVLADVIFFGQSEELTNLARTLRTTETRHFGIGEARDVGVALLDNDQVQHGNVLGDDATT 154
Query: 309 ----N*FTFSLSIAARSVT*VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFI 145
+ FT + ++AA + AL H++ +T V Q AL H E+LLVV D + ++LPF+
Sbjct: 155 ARLASAFTLASAVAAEAAR--ALGHEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 54.8 bits (126), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +1
Query: 73 VDEHKLRIFYEKRMGAEVEADQL-GDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLM 249
VD++K ++G EA+QL G K L++ GG+D GFPM+ V+ ++ ++L+
Sbjct: 121 VDQNKATNLVGLKIGDVFEANQLIGLPVK---LKITGGSDNSGFPMRFDVIGAAKRKILL 177
Query: 250 SKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVR 363
S G + P +GER+RK++RG + + + +IVR
Sbjct: 178 S-GPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR 214
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/94 (28%), Positives = 55/94 (58%)
Frame = +1
Query: 106 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 285
K++G E+ + E +GY L++ GG+D+ GF M+ + ++R+L+ +G Y +
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEK 84
Query: 286 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPG 387
G R+RKS+RG + +++++ +V G+ + G
Sbjct: 85 GLRRRKSLRGNTISKDITLINTKVVEYGSAPLGG 118
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 51.6 bits (118), Expect = 1e-05
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +1
Query: 157 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 336
GY L + GG+D GFPM + + R+L+S G + PR GER+RK+VRG + ++
Sbjct: 146 GYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRGNTITHDI 204
Query: 337 SVLALVIV 360
+ VIV
Sbjct: 205 VQINTVIV 212
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 49.6 bits (113), Expect = 6e-05
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +1
Query: 106 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 285
K++G EV+A LG GY + + GG+D+ G P ++ + R +LL+++G + P +
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVME 88
Query: 286 GERKRKSVR 312
GERKRK +R
Sbjct: 89 GERKRKMIR 97
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +1
Query: 157 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 324
G ++ GG D G PM GV + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 155 GLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 47.6 bits (108), Expect = 2e-04
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Frame = +1
Query: 22 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEW---KGYVLRVAGGNDK 192
KL +S P +G + FE+ D R F ++G E++ L D KG +R+ GG+
Sbjct: 5 KLVLSDPMSGKARQFEIKDPLAQR-FIGLKIGDELDGVILKDLIELPKGAKIRITGGSGI 63
Query: 193 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG-CIVDANLSVLALVIVRKG 369
+G PM GV + + +++ G Y P + G +K+K VRG I D+ + + A+++ K
Sbjct: 64 EGAPMHPGVPGPVK-KYILADGPPGYWPPKKGMKKKKLVRGNTISDSIVQINAVIVYPKD 122
Query: 370 AQEIPGLTDG 399
P + G
Sbjct: 123 YTGPPAIPLG 132
>UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5;
Thermoplasmatales|Rep: 30S ribosomal protein S6e -
Thermoplasma volcanium
Length = 128
Score = 46.0 bits (104), Expect = 7e-04
Identities = 33/117 (28%), Positives = 63/117 (53%)
Frame = +1
Query: 31 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMK 210
++ P TG E+ E ++ +++G EV D + + GY +++ GG+ GF M+
Sbjct: 8 IADPKTGKTYKREIPSE-RMSSLIGRKIGEEV--DGVFFDLVGYKMKITGGSSVDGFAMR 64
Query: 211 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 381
+ T + ++L+ K S YR ++G RKR + RG I+ ++++ + L I + G I
Sbjct: 65 PDLQTQGKKQILV-KYTSGYR-GKNGIRKRITARGSIIGSDITQINLKITQYGPTPI 119
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/68 (41%), Positives = 39/68 (57%)
Frame = +1
Query: 112 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 291
+G+E +A LG E K +R+ GG+DK G PM+ V +R +L+S+G R G
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGG 94
Query: 292 RKRKSVRG 315
R RK VRG
Sbjct: 95 RTRKLVRG 102
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 44.4 bits (100), Expect = 0.002
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +1
Query: 157 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 336
GY +++ GG D GF MK + R R+L + G Y P+ G+R+RK +RG + ++
Sbjct: 47 GYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLPGQRRRKMMRGKEIAPDI 105
Query: 337 SVLALVIVRKGAQEIPGL 390
+ +V G++ I L
Sbjct: 106 VQVNAKVVEYGSKSIKAL 123
>UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyces
maris DSM 8797|Rep: Pseudouridine synthase -
Planctomyces maris DSM 8797
Length = 352
Score = 42.3 bits (95), Expect = 0.009
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +1
Query: 190 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 369
++G K+GV S ++ L +G S + E + + +R + V+ LV +R G
Sbjct: 171 RKGVRFKEGVFRVSGLKYLKKQGKSAFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFG 230
Query: 370 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKP-RHK 546
+ L G RRL K+R+L N D+R ++GK+NA P + +
Sbjct: 231 PLNLGKLKTGE-SRRLSDTELKKLRQLLNEKHSPDIRH---------RKGKKNAAPAKTR 280
Query: 547 APK 555
AP+
Sbjct: 281 APR 283
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 40.7 bits (91), Expect = 0.027
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +1
Query: 112 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 291
+G E +A +G K L++ GG+DK G PM+ + +R +L+SKG + G+
Sbjct: 33 LGQETDASVVGLNGK---LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQ 88
Query: 292 RKRKSVRGCIVDANL 336
R RK +RG V +
Sbjct: 89 RVRKLMRGNTVSEEI 103
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 39.5 bits (88), Expect = 0.062
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +1
Query: 13 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 192
+V+K+ VS P +G E + L Y K++G ++ ++G + GY L++ GG+D
Sbjct: 5 SVVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDI 59
Query: 193 QGFPMKQGV 219
GFPM++ V
Sbjct: 60 AGFPMRKEV 68
>UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1;
Xylella fastidiosa Temecula1|Rep: Putative
uncharacterized protein - Xylella fastidiosa (strain
Temecula1 / ATCC 700964)
Length = 109
Score = 35.1 bits (77), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 156 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKG 257
G C RWR ++ + DE G + PC+ DV+G
Sbjct: 17 GACCMARWRCQEINVTDEVGYGMRLPCTPHDVRG 50
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 33.9 bits (74), Expect = 3.1
Identities = 13/61 (21%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 202 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 378
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 379 I 381
+
Sbjct: 465 L 465
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 33.5 bits (73), Expect = 4.0
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 22 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
KL+ SY A L EV D+ K RI+YE A ++ GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEHPNVASIK---FGDITKTYVVLVEGHYDNTG 497
Query: 199 FPMKQGVL 222
+K V+
Sbjct: 498 KNLKTQVI 505
>UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;
n=24; Bacteria|Rep: Phytoene dehydrogenase-related
protein - Rhodopseudomonas palustris
Length = 590
Score = 33.1 bits (72), Expect = 5.3
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -3
Query: 223 SGRPVSSGILACRCRQ-RHEVHSPSIHRLTDQPL 125
SGRPV+SGILA C Q +++ +P HR + P+
Sbjct: 22 SGRPVTSGILASLCEQWQNQPRTPLSHRSGNLPM 55
>UniRef50_UPI0001552B57 Cluster: PREDICTED: hypothetical protein;
n=2; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 215
Score = 32.3 bits (70), Expect = 9.3
Identities = 20/60 (33%), Positives = 24/60 (40%)
Frame = +1
Query: 115 GAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGER 294
GAE+ GDE G LR G +QG+ R R + HS R R G R
Sbjct: 44 GAEIPPAGAGDEPGGSTLRPCAGTRRQGYVTNARAPPRPRRRCFRAVRHSISRETRPGAR 103
>UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;
n=1; Haemophilus ducreyi|Rep: Possible uroporphyrinogen
III synthase - Haemophilus ducreyi
Length = 251
Score = 32.3 bits (70), Expect = 9.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL 141
M + ++YPA+ QKL ++ +H++ Y+ E+ AD L
Sbjct: 1 MNVLITYPASRAQKLVDMCQQHRIFAIYQPIFSVELGADLL 41
>UniRef50_A1TZN4 Cluster: Flagellar hook-associated protein FlgK;
n=2; Marinobacter|Rep: Flagellar hook-associated protein
FlgK - Marinobacter aquaeolei (strain ATCC 700491 / DSM
11845 / VT8)(Marinobacter hydrocarbonoclasticus (strain
DSM 11845))
Length = 688
Score = 32.3 bits (70), Expect = 9.3
Identities = 24/91 (26%), Positives = 42/91 (46%)
Frame = +1
Query: 187 DKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 366
D P +Q VL+ ++ + +G + ++ K + +G + DAN + ++ +
Sbjct: 123 DPTSLPQRQLVLSEAQQLVNRFQGLNQEFIQQRESVKTQMQQG-VKDANTLLKSIAELNL 181
Query: 367 GAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 459
E PGL G P L KR K+R+L L
Sbjct: 182 AISESPGLAQGREPLELMDKRDEKLRQLSEL 212
>UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4;
Actinomycetales|Rep: ATP-dependent helicase HrpA -
Nocardioides sp. (strain BAA-499 / JS614)
Length = 1282
Score = 32.3 bits (70), Expect = 9.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 70 VVDEHKLRIFYEKRMGAEVEADQLGDEW 153
VVDEH L FY+ R+GA+V + D+W
Sbjct: 774 VVDEHTLFDFYDARVGADVVSGAHFDQW 801
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,902,015
Number of Sequences: 1657284
Number of extensions: 13741545
Number of successful extensions: 40791
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 39329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40744
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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