Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0317
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 250 5e-67
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 248 3e-66
02_01_0295 - 1973115-1973404,1974138-1974663 29 2.9
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 3.8
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567... 27 8.9
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 8.9
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 250 bits (613), Expect = 5e-67
Identities = 124/201 (61%), Positives = 152/201 (75%), Gaps = 4/201 (1%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 372
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 373 QEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYV--VKRVLPAKEGKENAKPRHK 546
++PGLTD PR GPKRASKIRKLFNL K+DDVR+YV +R K GK+ + K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----K 176
Query: 547 APKIQRLVTPVVLQRRRHRLA 609
APKIQRLVTP+ LQR+R R+A
Sbjct: 177 APKIQRLVTPLTLQRKRARIA 197
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 248 bits (607), Expect = 3e-66
Identities = 123/201 (61%), Positives = 151/201 (75%), Gaps = 4/201 (1%)
Frame = +1
Query: 19 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 372
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 373 QEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYV--VKRVLPAKEGKENAKPRHK 546
++PGLTD PR GPKRASKIRKLFNL K+DDVR+YV +R K GK+ + K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----K 176
Query: 547 APKIQRLVTPVVLQRRRHRLA 609
APKIQRLVTP+ LQR+R R+A
Sbjct: 177 APKIQRLVTPLTLQRKRARIA 197
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +1
Query: 256 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 429
G S + + G ++ RG + + S AL + GA PG +P R+G +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224
Query: 430 ASKIRKLFNLXKEDDVRRYVVKRVLPAKEG 519
+KIRKL + ++D++ ++K +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +1
Query: 412 RLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 570
++ PK+A ++ + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>03_02_0109 +
5671418-5671631,5675610-5675690,5676249-5676340,
5676433-5676513,5676594-5676691,5676872-5676953,
5677050-5677088
Length = 228
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -1
Query: 543 MSGFSIFFSFLGWEHAFDDITTYIIFFXKVEQLTDFGSTFGT*TAGYISISQSRNFLGTL 364
++GF +FFSFLG FD +I + L+ G T G + ++ +N+ GT+
Sbjct: 104 LTGFGVFFSFLGIIFFFD---KGLIAMGNILFLSGLGLTIGLKSTMQF-FTKPKNYKGTI 159
Query: 363 A 361
+
Sbjct: 160 S 160
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 55 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 144
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,958,345
Number of Sequences: 37544
Number of extensions: 406323
Number of successful extensions: 1192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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