Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0317
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              270   8e-73
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   38   0.005
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)                 30   1.7  
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)                 30   1.7  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   3.0  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   3.0  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   3.9  
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 28   6.9  
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)            27   9.1  
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     27   9.1  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  270 bits (661), Expect = 8e-73
 Identities = 126/164 (76%), Positives = 142/164 (86%)
 Frame = +1

Query: 121 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 300
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 301 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVR 480
           KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNL KEDDVR
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 481 RYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQRRRHRLAL 612
           +YV++R LP KEGK   K + KAPKIQRLVTPVVLQR+R RLAL
Sbjct: 122 QYVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLAL 162


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -1

Query: 261 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 97
           V L  Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
          Length = 515

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 476 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 565
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
          Length = 515

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 476 YVVMSSNACSQPRKEKKMLNPDIRHLRSRG 565
           Y V  +  C+ PR   K+L P + HLR +G
Sbjct: 50  YSVFPNGLCTCPRNFTKLLKPPLSHLRLKG 79


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 307 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 447
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 397 GNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVK 495
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 127 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 210
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 26/86 (30%), Positives = 40/86 (46%)
 Frame = +1

Query: 289 ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLXKE 468
           + K KSV+   VD + S   L   R  AQE   L DG   ++L    A K     +L KE
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMK-----SLVKE 243

Query: 469 DDVRRYVVKRVLPAKEGKENAKPRHK 546
            ++ + V +R    +E ++  K + K
Sbjct: 244 LELEKLVEQRSELVQEKQKKKKEKEK 269


>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 271 CNMSGPLTSEDEHGCLSGRPVSSGILACR 185
           C  S  L +E   GC S RP+ SG  +CR
Sbjct: 105 CTSSAVLPAEKGGGCTSARPIRSG--SCR 131


>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
          Length = 757

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = +1

Query: 364 KGAQEIPGLTDGNV----PRRLGPK---RASKIRKLFNLXKEDDVRRYVVKRVLPAKEGK 522
           +GA+++P L +G V    P + G K   R++ +++L     E DVR +   RV   ++  
Sbjct: 267 RGARDVPPLEEGGVVRMRPFKFGKKHWDRSTVVKRLGEYEVETDVRTHRRHRVGLKEQNL 326

Query: 523 ENAKPRHKAP 552
             A P+   P
Sbjct: 327 PPATPQEADP 336


>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 445 KLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 564
           + F++ KEDD+  Y++   L  +  K NA   ++ P+  R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 430 ASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPR 540
           A  ++ + +    DDV+  ++K ++P KEG E+  P+
Sbjct: 22  AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,285,710
Number of Sequences: 59808
Number of extensions: 456218
Number of successful extensions: 1366
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)