Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0317
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   266   6e-72
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   3.5  
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   6.0  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  266 bits (653), Expect = 6e-72
 Identities = 128/196 (65%), Positives = 153/196 (78%)
 Frame = +1

Query: 19  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 378
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 379 IPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 558
           I GLTD  +PR+LGPKRASKIRKLFNL K DDV +YV+       +G      +  APKI
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKI 176

Query: 559 QRLVTPVVLQRRRHRL 606
           QRL+TP  + R+++ L
Sbjct: 177 QRLITPARIARKKYLL 192


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 37  YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 195
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 434 PKSVSCSTLXKKMMYVVMSSNACSQPRKEKKMLNPDIRHLRS 559
           PKS+  S   KK +   MS+    +  + +KM   D  HL++
Sbjct: 105 PKSLLTSETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKA 146


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 52  CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 195
           C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 343  LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVV 492
            L L   +K  QE+        P  +GPK A +IR L  L  + +   +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059


>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = +2

Query: 230 AVFVF*CQRATHVTDRA-----AMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*L 394
           A+  F C+   HVT  +      +E  +V++ + V+   I  S+  ++ + +   F    
Sbjct: 58  AIMYFWCKPNAHVTQTSFTIFTILENSHVSKDIGVIAVTIWCSFYAMMLSLLSIHFF--- 114

Query: 395 MEMYPAV*VPNVLPKSVSCSTLXKKMMYVVMSSN 496
              Y +V  P +L K  SC  + K  +Y++  S+
Sbjct: 115 -YRYTSVTAPILLMKRFSCRYIFKYTLYILTFSS 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,556,262
Number of Sequences: 27780
Number of extensions: 319347
Number of successful extensions: 898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)