Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0317
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   248   2e-66
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             248   2e-66
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   1.4  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    30   1.4  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   3.2  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   5.6  
At1g36320.1 68414.m04514 expressed protein similar to hypothetic...    28   5.6  
At4g31240.2 68417.m04435 expressed protein                             27   9.8  
At4g31240.1 68417.m04434 expressed protein                             27   9.8  
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    27   9.8  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  248 bits (608), Expect = 2e-66
 Identities = 127/201 (63%), Positives = 150/201 (74%), Gaps = 4/201 (1%)
 Frame = +1

Query: 19  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 372
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 373 QEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYV--VKRVLPAKEGKENAKPRHK 546
            ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR YV   +R    K+GKE +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS----K 176

Query: 547 APKIQRLVTPVVLQRRRHRLA 609
           APKIQRLVTP+ LQR+R R+A
Sbjct: 177 APKIQRLVTPLTLQRKRARIA 197


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  248 bits (607), Expect = 2e-66
 Identities = 125/201 (62%), Positives = 151/201 (75%), Gaps = 4/201 (1%)
 Frame = +1

Query: 19  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 198
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 199 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 372
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 373 QEIPGLTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYV--VKRVLPAKEGKENAKPRHK 546
            ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+GK+ +    K
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVS----K 176

Query: 547 APKIQRLVTPVVLQRRRHRLA 609
           APKIQRLVTP+ LQR+R R+A
Sbjct: 177 APKIQRLVTPLTLQRKRARIA 197


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 388 LTDGNVPRRLGPKRASKIRKLFNLXKEDDVRRYVVKRV--LPAKEGKENAK 534
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 4   GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 150
           GLT  +   +       +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 40  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 207
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 376 EIPGLTDGNVPRRLGPKRASKIRKL 450
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At1g36320.1 68414.m04514 expressed protein similar to hypothetical
           protein GB:CAB37532 from [Arabidopsis thaliana],
          Length = 414

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 442 RKLFNLXKE-DDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQRRRH 600
           R+L    KE D +R +  KR     + ++N + +HK  ++ R +  V    +RH
Sbjct: 115 RRLLAFSKEWDSIRPHFYKRCQERADSEDNPEMKHKVHRLARKLKEVDEDIQRH 168


>At4g31240.2 68417.m04435 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 213 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 112
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At4g31240.1 68417.m04434 expressed protein
          Length = 392

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 213 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 112
           L H     VVA + +K +    +   I LYFGAH
Sbjct: 180 LTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 424 KRASKIRKLFN--LXKEDDVRRYVVKRVLPA-KEGKENAK 534
           KR + I KL +  L + +D+R Y+V  +LP    G  NAK
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAK 618


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,906,554
Number of Sequences: 28952
Number of extensions: 301624
Number of successful extensions: 836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)