Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0314
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             172   2e-43
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   3e-38
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              147   6e-36
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   2e-34
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         71   6e-13
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         68   5e-12
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         67   1e-11
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          61   8e-10
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         49   4e-06
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.062
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.44 
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               27   9.4  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  172 bits (419), Expect = 2e-43
 Identities = 83/147 (56%), Positives = 96/147 (65%)
 Frame = +1

Query: 187 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 366
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 367 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAG 546
           G GYK S FHRVIKNFMIQ             SIYG+ F+DENF LKHYG GWL MANAG
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126

Query: 547 KDTNGSQFFITTVKTPWLDGRHVVFGK 627
           K+TNGSQF+ITT+KT WLDG H  FGK
Sbjct: 127 KNTNGSQFYITTIKTSWLDGSHTCFGK 153


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  155 bits (376), Expect = 3e-38
 Identities = 87/165 (52%), Positives = 104/165 (63%), Gaps = 18/165 (10%)
 Frame = +1

Query: 187 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 327
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 328 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE 492
           T   +F        +  +G GYK S FHRVI++FMIQ            +SIYG++F DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 493 NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGK 627
           NFKL+HYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGK
Sbjct: 128 NFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGK 172


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  147 bits (357), Expect = 6e-36
 Identities = 72/130 (55%), Positives = 86/130 (66%)
 Frame = +1

Query: 235 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 414
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 415 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTP 594
           M Q            +SIYG +FEDENF LKH GAG LSMAN+G +TNGSQFF+TT KT 
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD 253

Query: 595 WLDGRHVVFG 624
           WLDG+HVVFG
Sbjct: 254 WLDGKHVVFG 263


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  142 bits (344), Expect = 2e-34
 Identities = 73/131 (55%), Positives = 82/131 (62%)
 Frame = +1

Query: 232 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 411
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 412 FMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKT 591
           FM Q            +SIYG +F DENF LKH G G LSMANAG  TNGSQFF+ T KT
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKT 118

Query: 592 PWLDGRHVVFG 624
            WLDG+HVVFG
Sbjct: 119 SWLDGKHVVFG 129


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 34/56 (60%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
 Frame = +1

Query: 463 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGK 627
           SI+G  FEDE  + L+H     +SMANAG +TNGSQFFIT V TPWLD +H VFG+
Sbjct: 8   SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGR 63


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = +1

Query: 532 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGK 627
           MANAGKDTNGSQFFITTVKT WLDG+HVVFGK
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGK 32


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 28/55 (50%), Positives = 38/55 (69%)
 Frame = +1

Query: 463 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGK 627
           S+YG  FEDE+F + H   G + MAN G+ TNGSQF+IT    PW+D ++V FG+
Sbjct: 51  SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQ 105


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 31/41 (75%), Positives = 34/41 (82%)
 Frame = +1

Query: 505 KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGK 627
           +H   G LSMAN+G +TNGSQFFITTV TP LDGRHVVFGK
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGK 228


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +1

Query: 526 LSMANAGKDTNGSQFFITTVKTPWLDGRHVVFG 624
           LSMANAG  TNGSQFF+ T KT WLDG+HVVFG
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFG 35


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 25/41 (60%), Positives = 27/41 (65%)
 Frame = +1

Query: 463 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV 585
           SIYG  F DE F+ KH     LSMAN G +TNGSQFFI  V
Sbjct: 31  SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +1

Query: 475 ERFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGK 627
           E  +DE   L     H   G +SMAN G ++NGSQFFI   K P LD ++ +FGK
Sbjct: 286 EELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGK 340


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
 Frame = +1

Query: 280 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 459
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q            
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQGGGFDADMQQKD 87

Query: 460 RSIYGERFEDENFKLKHYGAGWLSMANAG-KDTNGSQFFITTVKTPWLDGRHVVFG 624
                +   D      H   G L+MA    +D+  SQFFI      +LD     FG
Sbjct: 88  TQAPIKNEADNGL---HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFG 140


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +1

Query: 280 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 408
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +1

Query: 286 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 399
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 242 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 141
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 242 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 141
           VTL PL +S+    ++N++   A+VRV  I  SL
Sbjct: 336 VTLSPLQVSAKTGSSLNDQAEVAMVRVSPILASL 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,175,944
Number of Sequences: 59808
Number of extensions: 345186
Number of successful extensions: 556
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)