Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0309
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.84 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.5  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.8  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 599 VLRLPVEGRSFERDAAISHDVFRPMSGG 516
           ++ +P  GRSFE       D+  P SGG
Sbjct: 757 MIGMPTYGRSFELVNKTQFDIGAPASGG 784



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 599 VLRLPVEGRSFERDAAISHDVFRPMSGG 516
           V+ +P  GR+F         V  P SGG
Sbjct: 328 VIGMPTYGRTFTLSNTAKFGVHAPASGG 355


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = -1

Query: 458  VLGRSIDGQSPHVVKSRVKWQTGAHPQKHVCAEVITRCPEVIFV 327
            +LGR  D   P     +     G  PQ+ V    +  C   +FV
Sbjct: 2200 ILGRDNDKTKPKPTTMKPTTTIGYEPQEPVLPAEVVPCQGRLFV 2243


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 615 DFICEQTRCYYYNY 656
           DF+C  T  Y+ NY
Sbjct: 145 DFLCRHTVEYFQNY 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,281
Number of Sequences: 336
Number of extensions: 3653
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)