Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0309
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26) 29 3.0
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3) 29 5.2
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 6.8
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_43181| Best HMM Match : rve (HMM E-Value=1e-25) 28 6.8
SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16) 28 9.0
SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_52329| Best HMM Match : DUF1059 (HMM E-Value=2.8) 28 9.0
SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 9.0
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 9.0
SB_22427| Best HMM Match : rve (HMM E-Value=7.5e-12) 28 9.0
SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_4788| Best HMM Match : rve (HMM E-Value=0) 28 9.0
SB_1193| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2) 28 9.0
SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26) 28 9.0
SB_46362| Best HMM Match : rve (HMM E-Value=3e-26) 28 9.0
SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15) 28 9.0
SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 9.0
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031) 28 9.0
>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 535 SVPCRAVRCGAVLPCGTSRGSML----SSACWAGASMGSL 428
SV CR V+C V+ C S+ L SS WA + GSL
Sbjct: 369 SVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408
>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 383
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I E C + G
Sbjct: 133 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 174
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I E C + G
Sbjct: 330 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITECEVCLTHRSG 371
>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
Length = 531
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Frame = +3
Query: 270 FETKEKADSITTYLTNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFNYMRRLPIDAP 449
+ T + + Y TN Y+ D +++ ++ T L L + RRL
Sbjct: 70 YNTSDDYSTNNDYSTNNDYSTSDEYSTNDDYNTKQRLQHQRRLQHQQRLQHQRRLQHQRR 129
Query: 450 AQHADDSMDP--LDVPQGSTAPQRTARHGTEH 539
QH + P P +TAP T ++
Sbjct: 130 LQHKTTTTAPTTTTAPATNTAPATTTAPNNDY 161
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 480 LDVPQGSTAPQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
L VP+ H + H+ GCI TF W P+ E+K++I + C + G
Sbjct: 637 LGVPRALRKELMEKTHSS-HIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 694
>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = +3
Query: 534 EHVMTNGCIALKAPTF--HWEPQHCGEIKDFICEQ--TRCYYYN 653
+H C+ + A F +W C + ++FICE+ C+ +N
Sbjct: 884 DHSGKEDCVEMMAGYFAGYWNDNFCEQFRNFICEKPFDSCFEFN 927
>SB_43181| Best HMM Match : rve (HMM E-Value=1e-25)
Length = 341
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C ++ G
Sbjct: 133 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHHSG 174
>SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16)
Length = 608
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 273 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 314
>SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 856 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 897
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 213 LNYFLSYQYCRSLGLQLA-SFETKEKADSITTYLTN 317
L+YF+++ YCR + L +T E + ++ + +TN
Sbjct: 591 LSYFVAFVYCRKINRSLTMGVDTAEMSGAVVSGITN 626
>SB_52329| Best HMM Match : DUF1059 (HMM E-Value=2.8)
Length = 364
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 276 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 317
>SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 342
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 82 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 123
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 969 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 1010
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 177 YFISRMNPYSPELNYFLSYQYCRSLGLQLASFETKEKADSI 299
+FI+ NPY + + LG + S ETKEK I
Sbjct: 2473 HFIAACNPYRKHTDQMIHKLESAGLGYHVTSQETKEKLGKI 2513
>SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 359
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 133 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 174
>SB_22427| Best HMM Match : rve (HMM E-Value=7.5e-12)
Length = 270
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 100 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 141
>SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 368 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 409
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 226 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 267
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 776 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 817
>SB_1193| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)
Length = 304
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 453 QHADDSMDPLDVPQ---GSTAPQRTARHGTEHVMTNGCIA 563
+ ++D D ++VPQ GSTA R+ R M C+A
Sbjct: 265 EESEDESDEMNVPQIYQGSTATSRSGRQCRPSTMYQDCLA 304
>SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26)
Length = 455
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 106 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 147
>SB_46362| Best HMM Match : rve (HMM E-Value=3e-26)
Length = 455
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 106 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 147
>SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15)
Length = 630
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 392 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 433
>SB_21749| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 353
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 531 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCYYYNYG 659
+ H+ GCI TF W P+ E+K++I + C + G
Sbjct: 247 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITKCEVCLTHRSG 288
>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
Length = 563
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 550 LVMTCSVPCRAVRCGAVLPC 491
+V+ C+V CRAV C VL C
Sbjct: 333 VVLCCAVLCRAVSCRVVLCC 352
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 550 LVMTCSVPCRAVRCGAVLPCGTSRGSMLSSA 458
+V+ C+V CRAV C AV C ++L A
Sbjct: 358 VVLCCAVSCRAVLCRAVSCCAVLCRAVLCRA 388
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,403,246
Number of Sequences: 59808
Number of extensions: 525570
Number of successful extensions: 1577
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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