Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0309
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin...    34   0.091
Z81542-9|CAI79191.1|  400|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z81542-8|CAB04417.2|  402|Caenorhabditis elegans Hypothetical pr...    34   0.12 
U80836-14|AAB37896.1|  185|Caenorhabditis elegans Hypothetical p...    32   0.37 
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z74030-4|CAA98436.1|  113|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z82052-9|CAB04825.2|  338|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF040651-4|AAB95014.1|  234|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL023851-1|CAA19554.1|  149|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81076-9|CAB03057.1|  372|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AL031627-7|CAA20959.2|  200|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin
           protein 3 protein.
          Length = 409

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
 Frame = +3

Query: 483 DVPQGSTAPQRTARHGTEHVMTNGCIALKAPTFHWEPQHCGEIKDFICEQTRCY----YY 650
           D   GSTA       G   V T  C+  +  +  W    C E + ++CE    +    YY
Sbjct: 95  DDNSGSTAAYDNFSPGNPKVTTGSCVYFETSSGRWLSAPCTEPRSYVCETPSTHEDPCYY 154

Query: 651 NYGS 662
           NY +
Sbjct: 155 NYNN 158


>Z81542-9|CAI79191.1|  400|Caenorhabditis elegans Hypothetical
           protein F49A5.5b protein.
          Length = 400

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
 Frame = +3

Query: 483 DVPQGSTAPQRTARHGTEHVMTNGCIALKAP---TFHWEPQHCGEIKDFICEQTRCYY-- 647
           DV  G+T+       G  + M  GCI  K        W    C EI  F+CE     Y  
Sbjct: 221 DVKSGTTSAYNNFADGYPNNMAGGCIYYKTTGTQAGQWSSGSCNEIMSFVCELPATIYDS 280

Query: 648 ---YNYGS 662
              YNY +
Sbjct: 281 TCKYNYNN 288


>Z81542-8|CAB04417.2|  402|Caenorhabditis elegans Hypothetical
           protein F49A5.5a protein.
          Length = 402

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
 Frame = +3

Query: 483 DVPQGSTAPQRTARHGTEHVMTNGCIALKAP---TFHWEPQHCGEIKDFICEQTRCYY-- 647
           DV  G+T+       G  + M  GCI  K        W    C EI  F+CE     Y  
Sbjct: 223 DVKSGTTSAYNNFADGYPNNMAGGCIYYKTTGTQAGQWSSGSCNEIMSFVCELPATIYDS 282

Query: 648 ---YNYGS 662
              YNY +
Sbjct: 283 TCKYNYNN 290


>U80836-14|AAB37896.1|  185|Caenorhabditis elegans Hypothetical
           protein B0432.12 protein.
          Length = 185

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 201 YSPELNYFLSYQYCRSLGLQLASFETKEKADSITTYLTNAGYNKYDFWTSGNNLG 365
           Y  ++N+  + ++C   G  LA   ++E+A  +      AG +   +W  G   G
Sbjct: 38  YHLKMNFPRAKKHCEQNGAHLAGITSREEAQKLIDLANEAGESNEQYWLGGQRKG 92


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 312 TNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFN 419
           T    N ++ WT G+  GTD F+W  TG P N  +N
Sbjct: 110 TCTALNSFE-WTDGSTTGTDGFIW-KTGDPNNYLYN 143


>Z74030-4|CAA98436.1|  113|Caenorhabditis elegans Hypothetical
           protein D1054.7 protein.
          Length = 113

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 342 WTSGNNLGTDMFLWMSTGLPFNAT 413
           WT G+  GTD F+W  TG P NA+
Sbjct: 57  WTDGSTTGTDGFIW-ETGEPNNAS 79


>Z82052-9|CAB04825.2|  338|Caenorhabditis elegans Hypothetical
           protein T25E12.7 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 483 DVPQGSTAPQRTARHGTEHVMTNGCIALKAP---TFHWEPQHCGEIKDFICE 629
           D+  GSTA       G  +++   C+           W  + CG++ +F+CE
Sbjct: 152 DIENGSTANYSNFADGFPNIVYGNCVYFITSGDEAGQWGNEQCGQVMNFVCE 203


>AF040651-4|AAB95014.1|  234|Caenorhabditis elegans Hypothetical
           protein W04H10.4 protein.
          Length = 234

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 312 TNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFN 419
           T    N ++ WT G+  GTD F+W   G P N  +N
Sbjct: 168 TCTALNSFE-WTDGSTTGTDGFIW-KAGDPNNYQYN 201


>Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical
           protein F13A7.7 protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 201 YSPELNYFLSYQYCRSLGLQ-LASFETKEKADSITTYLTNAGYNKYDFWTSG 353
           Y P L+Y  S    R+  +  LASF ++   DS  T+  N G ++ + W  G
Sbjct: 243 YIPNLSYSNSTSSSRASSVDSLASFNSQSSTDSQNTFRKNGGRDQLE-WKQG 293


>Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical
           protein F58A4.5 protein.
          Length = 786

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 201 YSPELNYFLSYQYCRSLGLQLASFETKEKADSITTYLTNAGY---NKYDFWTSGNNLGTD 371
           Y+   ++  + +YC SLG QLA    K   D  + Y  NA     N   FW   +NL  +
Sbjct: 49  YNTPKSFQAARRYCVSLGGQLAD---KINKDDSSLYSANADLEVANSTKFWVGASNLKCN 105

Query: 372 MFLWMSTG-LPFN 407
           +  W + G + FN
Sbjct: 106 I-AWENGGEIEFN 117


>AL023851-1|CAA19554.1|  149|Caenorhabditis elegans Hypothetical
           protein Y68A4B.1 protein.
          Length = 149

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 26/72 (36%), Positives = 30/72 (41%)
 Frame = +3

Query: 342 WTSGNNLGTDMFLWMSTGLPFNATFNYMRRLPIDAPAQHADDSMDPLDVPQGSTAPQRTA 521
           WT G+  GTD FLW + G P N    Y        PA    D+   +D   G  A Q   
Sbjct: 87  WTDGSTTGTDGFLWRN-GDPNNGGIYY--------PAY--KDNCLAVDARVGLLADQPC- 134

Query: 522 RHGTEHVMTNGC 557
             GT H M  GC
Sbjct: 135 --GTAHYMGYGC 144


>Z81076-9|CAB03057.1|  372|Caenorhabditis elegans Hypothetical
           protein F35C5.8 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
 Frame = +3

Query: 549 NGCIA---LKAPTFHWEPQHCGEIKDFICEQTRCYYYNY 656
           N C+A       T  W P  C     FICEQ  C   NY
Sbjct: 330 NACVADMKYSDGTTAWTPVSCANNFRFICEQVACDTDNY 368


>U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical
           protein C14F11.1b protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 439 SMLLPSTLMIAWTL*TYHKEALLHNAPPDMGRNTS*LMAASRSKLRPSTGS 591
           S LLP TLM    L    +    H+ P       + L A+SR +L  S GS
Sbjct: 235 SPLLPRTLMRLLVLLLKSRSLFAHSTPTHQSMELALLPASSRIQLSTSNGS 285


>Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical
           protein C31G12.2 protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 342 WTSGNNLGTDMFLWMSTGLPFNA 410
           WT G+  GTD ++W S G P NA
Sbjct: 138 WTDGSTTGTDGWIWRS-GEPNNA 159


>AL031627-7|CAA20959.2|  200|Caenorhabditis elegans Hypothetical
           protein Y102A5C.16 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 342 WTSGNNLGTDMFLWMSTGLPFNATFN 419
           WT G+  G+D F+W     P N + N
Sbjct: 143 WTDGSATGSDAFIWNVATEPNNGSLN 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,776,649
Number of Sequences: 27780
Number of extensions: 370855
Number of successful extensions: 973
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)