Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0309
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.98 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 667 PFHPRRGNARKPLSLTTTTT 726
           P HP   +   P ++TTTTT
Sbjct: 93  PLHPPASSTSLPATITTTTT 112


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 177 YFISRMNPYSPELNYF 224
           Y++ +  P  P+LNY+
Sbjct: 182 YYLHQFAPEQPDLNYY 197


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 177 YFISRMNPYSPELNYF 224
           Y++ +  P  P+LNY+
Sbjct: 182 YYLHQFAPEQPDLNYY 197


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 443 IDGQSPHVVKSRVKWQTGA 387
           I+  S H  K R++W TGA
Sbjct: 134 IESFSYHKQKLRLRWGTGA 152


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 403 NGRPVLIHKNMSVPRLLPDVQ 341
           NGR   I + M+  RLLP V+
Sbjct: 28  NGREDQIPREMNTERLLPYVE 48


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 403 NGRPVLIHKNMSVPRLLPDVQ 341
           NGR   I + M+  RLLP V+
Sbjct: 28  NGREDQIPREMNTERLLPYVE 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,380
Number of Sequences: 438
Number of extensions: 4564
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)