Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0309
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00340.1 68417.m00045 S-locus glycoprotein family protein / c...    29   2.4  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    28   5.6  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    28   5.6  
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin...    28   7.4  

>At4g00340.1 68417.m00045 S-locus glycoprotein family protein /
           curculin-like (mannose-binding) lectin family protein /
           PAN domain-containing protein contains Pfam profiles:
           PF01453 lectin (probable mannose binding), PF00954
           S-locus glycoprotein family, PF00024 PAN domain
          Length = 402

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 411 SR*MADRCSSTKTCL----CRGYYPMSRSHICYSLHLLDKSLSNLPSPSSRT 268
           SR    + S  KTCL    C G+Y   +S++C    +L +S +NL + SS T
Sbjct: 350 SRLQVSKSSCAKTCLGNSSCVGFYHKEKSNLC---KILLESPNNLKNSSSET 398


>At5g54650.2 68418.m06805 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 65   LIRQYAVLLDIMSRAARSFP-QPSRSSKNNNDTTGWRSVFYL*DESVQPRAQLFPVLSVL 241
            ++R + ++LD   +  R    +P R ++    T    S       S+ PR +LFP ++  
Sbjct: 831  IVRDFLIILDKSCKEVREARGRPVRMARKQGSTASASSETPRQTPSLDPRQKLFPAITER 890

Query: 242  QIIRSST 262
            ++ +SS+
Sbjct: 891  RVDQSSS 897


>At5g54650.1 68418.m06804 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 900

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 65   LIRQYAVLLDIMSRAARSFP-QPSRSSKNNNDTTGWRSVFYL*DESVQPRAQLFPVLSVL 241
            ++R + ++LD   +  R    +P R ++    T    S       S+ PR +LFP ++  
Sbjct: 831  IVRDFLIILDKSCKEVREARGRPVRMARKQGSTASASSETPRQTPSLDPRQKLFPAITER 890

Query: 242  QIIRSST 262
            ++ +SS+
Sbjct: 891  RVDQSSS 897


>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
           D2.1 protein [Nicotiana tabacum] GI:4160298; contains
           Pfam profile PF00134: Cyclin, N-terminal domain
          Length = 298

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 171 VQYFISRMNPYSPELNYFL---SYQYCRSL--GLQLASFETKEKADSITTYLTNAGYNKY 335
           V+YF+S++N Y  E +  L   S Q   S   G+    F   E A ++   ++   ++K+
Sbjct: 177 VRYFLSKINGYDQEPHSRLVTRSLQVIASTTKGIDFLEFRASEIAAAVALSVSGEHFDKF 236

Query: 336 DFWTSGNNL 362
            F +S ++L
Sbjct: 237 SFSSSFSSL 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,754,944
Number of Sequences: 28952
Number of extensions: 337154
Number of successful extensions: 833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)