Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0307
         (364 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   1.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   3.9  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   5.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    20   6.8  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    20   9.0  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 217 VLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAF 315
           V  T   P+ +    +LP  ++ E  ATL PAF
Sbjct: 63  VSNTNTEPLLSEALTNLPGEKWKEMRATLSPAF 95


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 120 LEFSCGALPRKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPSDGVQGPARQR 278
           L+   G L RKR+     S+ +R +    + R  +    + PS+G++   R +
Sbjct: 344 LDSEPGMLKRKRQKYHDPSQLLRHVEESDKQRTHQPFLLNIPSEGIKVEPRDK 396


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 274 CRAGPWTPSL 245
           C  GPW PS+
Sbjct: 467 CGFGPWKPSM 476


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 100 ENLHKLCLNLVVALFPEKEG 159
           +NL K CL L   L  +K+G
Sbjct: 403 KNLVKKCLELFEELAEDKDG 422


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 19.8 bits (39), Expect = 9.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 322 LLENCPRGAE 351
           L+ NCPRG +
Sbjct: 22  LITNCPRGGK 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,243
Number of Sequences: 336
Number of extensions: 1420
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7404950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)