Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0307
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    26   2.1  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    25   2.7  
SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    24   6.3  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 53  IRPRNFQAPELGSCGMRIYISSA*I*LWRSS 145
           IRP  F  P LG   ++I   +  I LW+++
Sbjct: 471 IRPVEFTEPALGVASLKIQFDAVEILLWKTA 501


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 114 ALLEFSCGALPRKRRTTDGNSKDI 185
           A  +F    LP K++ TDG  KDI
Sbjct: 262 ACSKFEAEGLPFKKKLTDGRMKDI 285


>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/61 (18%), Positives = 30/61 (49%)
 Frame = +3

Query: 168 GNSKDIRQLRGRSEARCTENHRGSDPSDGVQGPARQRV*RGRRHAAPRLQGTARELSPRG 347
           GN +D+ + R   +++ ++  +  DP+  ++  A+  + R ++ AA   +        +G
Sbjct: 4   GNQRDVDRARNLKKSQASKKKQAGDPTKRLE--AQAEIMRAKQRAADERKAAEANGGSKG 61

Query: 348 R 350
           +
Sbjct: 62  K 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,899
Number of Sequences: 5004
Number of extensions: 23837
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)