Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0307
(364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0490 + 19639226-19639228,19639718-19640133,19640793-196408... 30 0.49
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 30 0.64
11_04_0240 - 15246357-15246935,15247100-15247561 29 0.85
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934... 28 2.6
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 27 3.4
09_04_0206 + 15607490-15607933 27 3.4
01_06_1230 + 35575840-35576020,35576122-35576170,35576365-355764... 27 3.4
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 27 6.0
10_07_0016 + 11826066-11826773 27 6.0
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 27 6.0
01_02_0010 + 10142450-10142570,10142811-10142965,10143295-101434... 27 6.0
12_01_0341 - 2621503-2621892 26 7.9
09_02_0465 - 9594866-9595672,9596036-9597496 26 7.9
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388... 26 7.9
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 26 7.9
03_05_0555 + 25555081-25555432,25555488-25555699 26 7.9
>12_02_0490 +
19639226-19639228,19639718-19640133,19640793-19640846,
19640983-19641045,19641122-19641365,19641634-19641706,
19641911-19641939
Length = 293
Score = 30.3 bits (65), Expect = 0.49
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = +1
Query: 46 LNHP---PPELSSTRTRIMWNENLHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRV 216
LNHP PPE+ + +W ENL NL ++ KE + +YG + EA R
Sbjct: 184 LNHPLLLPPEIRMSSYLNLWIENLTPDQHNLYNSITSYKEKVPNNKTFMYGDTTREAHRF 243
Query: 217 VLRTIEGPI----RAMVSKDLPDNEFDEDDATLRPAF 315
T I R + S + FD D L+ F
Sbjct: 244 SRNTASHYISHWRRLIPSSNRTKAPFDMVDKELKKCF 280
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 29.9 bits (64), Expect = 0.64
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Frame = +3
Query: 126 FSCGALPRKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPSDGVQGPARQRV*RG---RR 296
+ CG R + KD++Q RG S +R R PS G GP G
Sbjct: 133 YGCGERGHILRECKNSPKDLKQERGYSRSRSPRRRR--SPSYGKSGPPSHWGSHGADREE 190
Query: 297 HAAPRLQGTARELSPRGRDS 356
R G SPR DS
Sbjct: 191 RLHSRRDGRGYSRSPRRHDS 210
>11_04_0240 - 15246357-15246935,15247100-15247561
Length = 346
Score = 29.5 bits (63), Expect = 0.85
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 144 PRKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPSDGVQGPARQRV*RGRRHAAPRLQG- 320
P + +GN + R G E E GS PS G Q+ RG+R AA +L+G
Sbjct: 31 PNQNLNEEGNVE--RDAEGNQEGNGEEEASGSQPSAG------QKRARGQRGAAKKLEGW 82
Query: 321 -TARELSPRGRDSA 359
E+ GR SA
Sbjct: 83 HIITEVDEDGRPSA 96
>10_08_0506 +
18390892-18391373,18392699-18392798,18393152-18393485,
18393756-18393868,18394437-18394565,18394746-18394839,
18394942-18395025,18395265-18395896,18396662-18396951,
18397098-18397242,18397876-18397973,18398075-18398156,
18398607-18398612,18398845-18398928
Length = 890
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 129 SCGALPRKRRTTDGNSKDIRQLRGRSEARCTENHRGSDP 245
S G + + ++DGNS+++ + R SE T++ G DP
Sbjct: 544 SSGWISIRAHSSDGNSREMAKRRRLSENVITDSGGGDDP 582
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 216 CTENHRGSDPSDGVQGPARQRV*RGRR 296
C ++HR DP+D P R+R RR
Sbjct: 13 CAKHHRSPDPADPAASPKRRRRHHRRR 39
>09_04_0206 + 15607490-15607933
Length = 147
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 234 GSDPSDGVQGPARQRV*RGRRHAAPRLQGTAR-ELSPR-GRDSAH 362
GSDP Q + V RG +AP G AR E SP G AH
Sbjct: 95 GSDPLPAAQKVRAEEVQRGAAASAPEFGGFARGESSPEYGVQQAH 139
>01_06_1230 +
35575840-35576020,35576122-35576170,35576365-35576441,
35576883-35577145,35577241-35577387,35578569-35578766
Length = 304
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 34 GFISLNHPPPELSSTRTRIMWNE 102
G SLN PPP +SST+ W +
Sbjct: 280 GMGSLNAPPPRVSSTQINTDWEQ 302
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 202 EAKRVVLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGAETL 357
E +R++ R + +KDL D E + ATL A R++ E RG +
Sbjct: 1682 ELQRLIARMGALQVAIRNAKDLHDQESTKSAATLAAAHRDIQELKARGGSQM 1733
>10_07_0016 + 11826066-11826773
Length = 235
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 178 RIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELL 327
R++ ++ + + I G + A + LP+++ D T P FR+LL
Sbjct: 95 RLHAATASTTAAAAVAGIPGFLFATIPDGLPESDADATMTTCLPHFRKLL 144
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 135 GALPRKRRTTDGNSKDIRQLRGRSEARCTE 224
GA PR + G +RQLR +RC E
Sbjct: 59 GATPRSKGRACGGGGVVRQLRALVSSRCVE 88
>01_02_0010 +
10142450-10142570,10142811-10142965,10143295-10143477,
10143691-10144043,10144220-10144388
Length = 326
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 255 HHRSDRTLDGSQYNALRFCPGAAVYPCY 172
+ RSD+TLD + ++ L FC + CY
Sbjct: 131 NRRSDQTLDETCWSDLEFCKQTQNWYCY 158
>12_01_0341 - 2621503-2621892
Length = 129
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 211 RVVLRTIEGPIRAMVSKDLPDN--EFDEDDATLRPAFRELLENCPRGA 348
+++ ++G I + P N D+DD LRPA ++ ++ P GA
Sbjct: 15 KIMSMDVDGEILKLPPPPPPLNGVSSDDDDEALRPATADMADDPPGGA 62
>09_02_0465 - 9594866-9595672,9596036-9597496
Length = 755
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 82 TRIMWNENLHKLCLNLVVALFPEKEGLLMEIARIYGSSG 198
+RI N L + + L PE G+ + ++ IY SSG
Sbjct: 562 SRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSG 600
>09_02_0071 -
3877231-3877807,3880716-3880722,3880723-3881000,
3881287-3883916
Length = 1163
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 82 TRIMWNENLHKLCLNLVVALFPEKEGLLMEIARIYGSSG 198
+R+ + L KL + L PEK G + +A Y SSG
Sbjct: 684 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSG 722
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 26.2 bits (55), Expect = 7.9
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +1
Query: 103 NLHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEF 282
++HKLC ++ ++L +K+ L G S VL+ +EG + + SK++ DNE
Sbjct: 1230 SIHKLCDSIFMSLIDQKDDLA-------GYSDL----FVLKQLEGYLADINSKEIMDNEV 1278
Query: 283 DE 288
E
Sbjct: 1279 KE 1280
>03_05_0555 + 25555081-25555432,25555488-25555699
Length = 187
Score = 26.2 bits (55), Expect = 7.9
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Frame = +3
Query: 141 LPRKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPS---------DGVQGPARQRV*RGR 293
+P R G ++ I+QLR EA + RG+ S DG G +QR R
Sbjct: 1 MPFPRSRASGLNRGIQQLRQEDEADLSRRSRGTRRSQAVGVVPLVDGGCGQVQQRQGIAR 60
Query: 294 RHAAPRLQ--GTARELSPRGRDSAH 362
R +++ G A+ P G ++ +
Sbjct: 61 RQPTSQVEPGGAAKGTRPAGANTGN 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,190,078
Number of Sequences: 37544
Number of extensions: 185628
Number of successful extensions: 557
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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