Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0307
(364 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34316| Best HMM Match : Hormone_4 (HMM E-Value=7.6) 38 0.002
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 2.0
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12) 28 2.0
SB_44896| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 27 4.6
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 26 8.0
SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23) 26 8.0
>SB_34316| Best HMM Match : Hormone_4 (HMM E-Value=7.6)
Length = 131
Score = 38.3 bits (85), Expect = 0.002
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +1
Query: 172 IARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGAE 351
+A IY +S KR++LR +E PIRA+ P +L+ENCP GAE
Sbjct: 2 LAIIYTASSQMIKRIILRHLEHPIRAI--------------GMASPELLQLVENCPTGAE 47
Query: 352 TLL 360
TL+
Sbjct: 48 TLI 50
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 216 NALRFCPGAAVYPCYFH 166
N R CPG+A+ PCY H
Sbjct: 3096 NCSRECPGSALNPCYGH 3112
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 34 GFISLNHPPPELSSTRTRIMWNENLHKLCLNLVVALFPEKEG 159
GF+S + PPP L ST + W + + A P ++G
Sbjct: 1488 GFVSTDPPPPPLRSTVRCLTWTDCPRTSTTSAPAATAPTRQG 1529
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 28.3 bits (60), Expect = 2.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 186 RQLRGRSEARCTENHRGSDPSDGVQGPARQRV*RGRRHAAPRLQGTARELSPRG 347
R LRG + + RG S GVQG + +G R+ AP G ++ PRG
Sbjct: 309 RGLRGLRGPQGNQGLRGLKGSRGVQGRPGKNGAKG-RNGAPGRTGARGKIGPRG 361
>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
Length = 299
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = +3
Query: 120 LEFSCGALPRKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPSDGVQGPARQRV*RGRRH 299
L F CG R S IR+L + R HR + PSD + A QR +R
Sbjct: 41 LVFGCGEFVRVEIKLSEQSTRIRELENMLKTRDCFEHRHAAPSD-AKRDAHQR----QRR 95
Query: 300 AAP 308
AAP
Sbjct: 96 AAP 98
>SB_44896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 16 HALLYLGFISLNHPPPELSSTR 81
H+L+ L +SL H PP LS TR
Sbjct: 88 HSLVVLPLLSLTHGPPLLSLTR 109
>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
Length = 865
Score = 27.1 bits (57), Expect = 4.6
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 141 LPRKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPSD-GVQGPARQRV*RGRRHAAPRLQ 317
LPR +R + D R RGRS+ R + R D SD G R R R R +
Sbjct: 101 LPRSKRERTQDKSDGRDGRGRSKERLRD--RRDDRSDKGRWSERRSSKDRESRKREHRSR 158
Query: 318 GTARELSPR 344
+R+ P+
Sbjct: 159 SKSRDKKPK 167
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/64 (21%), Positives = 33/64 (51%)
Frame = +1
Query: 100 ENLHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNE 279
+ +++L ++ L+P+ + E++ ++ EAK++ ++ P + + P NE
Sbjct: 601 DQIYELGYKMLNKLYPQVLAIAREVSG--KTNDTEAKKLFQARLKAPDMSYNQQPFPANE 658
Query: 280 FDED 291
DED
Sbjct: 659 SDED 662
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 195 RGRSEARCTENHRGSDPSDGVQGPARQRV*RGRRHAAPRLQGT 323
+GR E RC +RG + V R + R PR QGT
Sbjct: 564 QGRQECRCNHGYRGDGVNYCVSTTVRPQT-TDRPKTTPRPQGT 605
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 147 RKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPSDGVQG 263
+K++ DG K+ ++ RG+S + E+ + DG +G
Sbjct: 1033 QKKKGGDGGDKEDKKKRGKSGEKKDEDQKEDADGDGKKG 1071
>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
Length = 940
Score = 26.2 bits (55), Expect = 8.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 289 DDATLRPAFRELLENCPR 342
DDA L+ EL ENCP+
Sbjct: 202 DDAVLKSGLIELAENCPK 219
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,153,473
Number of Sequences: 59808
Number of extensions: 205135
Number of successful extensions: 618
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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