Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0307
(364 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y10931-1|CAA71861.1| 1142|Homo sapiens symplekin protein. 72 5e-13
U49240-1|AAC50667.1| 1142|Homo sapiens symplekin protein. 72 5e-13
BC006567-1|AAH06567.1| 1142|Homo sapiens SYMPK protein protein. 72 5e-13
BC006536-1|AAH06536.1| 1142|Homo sapiens SYMPK protein protein. 72 5e-13
AB210010-1|BAE06092.1| 1073|Homo sapiens SYMPK variant protein p... 72 5e-13
M60922-1|AAA65729.1| 379|Homo sapiens surface antigen protein. 30 2.5
CR542265-1|CAG47061.1| 379|Homo sapiens FLOT2 protein. 30 2.5
CR541784-1|CAG46583.1| 379|Homo sapiens FLOT2 protein. 30 2.5
BT019478-1|AAV38285.1| 379|Homo sapiens flotillin 2 protein. 30 2.5
BT019477-1|AAV38284.1| 379|Homo sapiens flotillin 2 protein. 30 2.5
BC017292-1|AAH17292.1| 379|Homo sapiens FLOT2 protein protein. 30 2.5
BC003683-1|AAH03683.1| 385|Homo sapiens FLOT2 protein protein. 30 2.5
BC109258-1|AAI09259.1| 560|Homo sapiens ATH1, acid trehalase-li... 29 3.4
BC109257-1|AAI09258.1| 560|Homo sapiens ATH1, acid trehalase-li... 29 3.4
AK090428-1|BAC03409.1| 339|Homo sapiens FLJ00345 protein protein. 29 3.4
>Y10931-1|CAA71861.1| 1142|Homo sapiens symplekin protein.
Length = 1142
Score = 72.1 bits (169), Expect = 5e-13
Identities = 48/125 (38%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Frame = +1
Query: 1 EVIEKHALLYLGFISLNHPPPEL----SSTRTRIMWNENLHKLCLNLVVALFPEKEGLLM 168
E +EK AL YL + +PP L T W E K CL L +AL P+ L+
Sbjct: 615 EYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIH 674
Query: 169 EIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGA 348
E+A +Y + A+ KR VLR IE PIR M P L+ENCP+GA
Sbjct: 675 ELAAVYTEAIADIKRTVLRVIEQPIRGMGMNS--------------PELLLLVENCPKGA 720
Query: 349 ETLLT 363
ETL+T
Sbjct: 721 ETLVT 725
>U49240-1|AAC50667.1| 1142|Homo sapiens symplekin protein.
Length = 1142
Score = 72.1 bits (169), Expect = 5e-13
Identities = 48/125 (38%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Frame = +1
Query: 1 EVIEKHALLYLGFISLNHPPPEL----SSTRTRIMWNENLHKLCLNLVVALFPEKEGLLM 168
E +EK AL YL + +PP L T W E K CL L +AL P+ L+
Sbjct: 615 EYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIH 674
Query: 169 EIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGA 348
E+A +Y + A+ KR VLR IE PIR M P L+ENCP+GA
Sbjct: 675 ELAAVYTEAIADIKRTVLRVIEQPIRGMGMNS--------------PELLLLVENCPKGA 720
Query: 349 ETLLT 363
ETL+T
Sbjct: 721 ETLVT 725
>BC006567-1|AAH06567.1| 1142|Homo sapiens SYMPK protein protein.
Length = 1142
Score = 72.1 bits (169), Expect = 5e-13
Identities = 48/125 (38%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Frame = +1
Query: 1 EVIEKHALLYLGFISLNHPPPEL----SSTRTRIMWNENLHKLCLNLVVALFPEKEGLLM 168
E +EK AL YL + +PP L T W E K CL L +AL P+ L+
Sbjct: 615 EYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIH 674
Query: 169 EIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGA 348
E+A +Y + A+ KR VLR IE PIR M P L+ENCP+GA
Sbjct: 675 ELAAVYTEAIADIKRTVLRVIEQPIRGMGMNS--------------PELLLLVENCPKGA 720
Query: 349 ETLLT 363
ETL+T
Sbjct: 721 ETLVT 725
>BC006536-1|AAH06536.1| 1142|Homo sapiens SYMPK protein protein.
Length = 1142
Score = 72.1 bits (169), Expect = 5e-13
Identities = 48/125 (38%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Frame = +1
Query: 1 EVIEKHALLYLGFISLNHPPPEL----SSTRTRIMWNENLHKLCLNLVVALFPEKEGLLM 168
E +EK AL YL + +PP L T W E K CL L +AL P+ L+
Sbjct: 615 EYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIH 674
Query: 169 EIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGA 348
E+A +Y + A+ KR VLR IE PIR M P L+ENCP+GA
Sbjct: 675 ELAAVYTEAIADIKRTVLRVIEQPIRGMGMNS--------------PELLLLVENCPKGA 720
Query: 349 ETLLT 363
ETL+T
Sbjct: 721 ETLVT 725
>AB210010-1|BAE06092.1| 1073|Homo sapiens SYMPK variant protein
protein.
Length = 1073
Score = 72.1 bits (169), Expect = 5e-13
Identities = 48/125 (38%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Frame = +1
Query: 1 EVIEKHALLYLGFISLNHPPPEL----SSTRTRIMWNENLHKLCLNLVVALFPEKEGLLM 168
E +EK AL YL + +PP L T W E K CL L +AL P+ L+
Sbjct: 762 EYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIH 821
Query: 169 EIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGA 348
E+A +Y + A+ KR VLR IE PIR M P L+ENCP+GA
Sbjct: 822 ELAAVYTEAIADIKRTVLRVIEQPIRGMGMNS--------------PELLLLVENCPKGA 867
Query: 349 ETLLT 363
ETL+T
Sbjct: 868 ETLVT 872
>M60922-1|AAA65729.1| 379|Homo sapiens surface antigen protein.
Length = 379
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 133 VALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMV 255
V + EKE L + + G + + K VVL+T+EG +R+++
Sbjct: 26 VKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSIL 66
>CR542265-1|CAG47061.1| 379|Homo sapiens FLOT2 protein.
Length = 379
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 133 VALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMV 255
V + EKE L + + G + + K VVL+T+EG +R+++
Sbjct: 26 VKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSIL 66
>CR541784-1|CAG46583.1| 379|Homo sapiens FLOT2 protein.
Length = 379
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 133 VALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMV 255
V + EKE L + + G + + K VVL+T+EG +R+++
Sbjct: 26 VKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSIL 66
>BT019478-1|AAV38285.1| 379|Homo sapiens flotillin 2 protein.
Length = 379
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 133 VALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMV 255
V + EKE L + + G + + K VVL+T+EG +R+++
Sbjct: 26 VKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSIL 66
>BT019477-1|AAV38284.1| 379|Homo sapiens flotillin 2 protein.
Length = 379
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 133 VALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMV 255
V + EKE L + + G + + K VVL+T+EG +R+++
Sbjct: 26 VKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSIL 66
>BC017292-1|AAH17292.1| 379|Homo sapiens FLOT2 protein protein.
Length = 379
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 133 VALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMV 255
V + EKE L + + G + + K VVL+T+EG +R+++
Sbjct: 26 VKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSIL 66
>BC003683-1|AAH03683.1| 385|Homo sapiens FLOT2 protein protein.
Length = 385
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 133 VALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMV 255
V + EKE L + + G + + K VVL+T+EG +R+++
Sbjct: 75 VKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSIL 115
>BC109258-1|AAI09259.1| 560|Homo sapiens ATH1, acid trehalase-like
1 (yeast) protein.
Length = 560
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 271 RAGPWTPSLGSDPRWFSVQRASLLP 197
RAGPW P L ++ W S R SLLP
Sbjct: 473 RAGPWAPHLEAE-LWPSQSRLSLLP 496
>BC109257-1|AAI09258.1| 560|Homo sapiens ATH1, acid trehalase-like
1 (yeast) protein.
Length = 560
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 271 RAGPWTPSLGSDPRWFSVQRASLLP 197
RAGPW P L ++ W S R SLLP
Sbjct: 473 RAGPWAPHLEAE-LWPSQSRLSLLP 496
>AK090428-1|BAC03409.1| 339|Homo sapiens FLJ00345 protein protein.
Length = 339
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 271 RAGPWTPSLGSDPRWFSVQRASLLP 197
RAGPW P L ++ W S R SLLP
Sbjct: 252 RAGPWAPHLEAE-LWPSQSRLSLLP 275
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,307,368
Number of Sequences: 237096
Number of extensions: 969206
Number of successful extensions: 2342
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2337
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2248517154
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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