Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0307
         (364 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118592-1|AAM49961.1| 1165|Drosophila melanogaster LD45768p pro...    56   2e-08
AE014297-340|AAF51962.2| 1165|Drosophila melanogaster CG2097-PA ...    56   2e-08
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros...    28   4.2  
BT021219-1|AAX33367.1|  146|Drosophila melanogaster RH55750p pro...    27   5.6  
AE014297-2547|AAF55570.1| 1194|Drosophila melanogaster CG14304-P...    27   5.6  
AY070551-1|AAL48022.1|  340|Drosophila melanogaster LD28119p pro...    27   7.4  
AE014297-1313|AAF54653.1|  340|Drosophila melanogaster CG10898-P...    27   7.4  
AE014296-1887|AAN11896.1|  565|Drosophila melanogaster CG33048-P...    27   7.4  

>AY118592-1|AAM49961.1| 1165|Drosophila melanogaster LD45768p protein.
          Length = 1165

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
 Frame = +1

Query: 7    IEKHALLYLGFISLNHPPPELSST-----RTRIMWNENLHKLCLNLVVALFPEK-EGLLM 168
            I++ AL +L FI    PP  + S           W E+  K+C  L   L P K E  L 
Sbjct: 746  IDEFALEWLKFIEQESPPAAVFSQDFGRPTEEPDWREDTTKVCFGLAFTLLPYKPEVYLQ 805

Query: 169  EIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGA 348
            +I +++ S+ AE KR +LR+++ PI+ M  +               P   +L+E+CP+G 
Sbjct: 806  QICQVFVSTSAELKRTILRSLDIPIKKMGVES--------------PTLLQLIEDCPKGM 851

Query: 349  ETLL 360
            ETL+
Sbjct: 852  ETLV 855


>AE014297-340|AAF51962.2| 1165|Drosophila melanogaster CG2097-PA
            protein.
          Length = 1165

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
 Frame = +1

Query: 7    IEKHALLYLGFISLNHPPPELSST-----RTRIMWNENLHKLCLNLVVALFPEK-EGLLM 168
            I++ AL +L FI    PP  + S           W E+  K+C  L   L P K E  L 
Sbjct: 746  IDEFALEWLKFIEQESPPAAVFSQDFGRPTEEPDWREDTTKVCFGLAFTLLPYKPEVYLQ 805

Query: 169  EIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGA 348
            +I +++ S+ AE KR +LR+++ PI+ M  +               P   +L+E+CP+G 
Sbjct: 806  QICQVFVSTSAELKRTILRSLDIPIKKMGVES--------------PTLLQLIEDCPKGM 851

Query: 349  ETLL 360
            ETL+
Sbjct: 852  ETLV 855


>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for type II retrotransposable
           element  R2Dm.  ).
          Length = 1057

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 138 ALPRKRRTTDGNSKDIRQLRGRSEARCTENH 230
           ALP K RTT G  +  RQ R   +A  T NH
Sbjct: 863 ALPTKSRTTRGRHELERQCRAGCDAPETTNH 893


>BT021219-1|AAX33367.1|  146|Drosophila melanogaster RH55750p
           protein.
          Length = 146

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 135 GALPRKRRTTDGNSKDIRQLRGRSEARCTENHRG 236
           G +PR+R T D   +D  + RGRS         G
Sbjct: 87  GHMPRRRHTRDDRKRDRSRSRGRSRGHSRGRSHG 120


>AE014297-2547|AAF55570.1| 1194|Drosophila melanogaster CG14304-PA
            protein.
          Length = 1194

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 351  LCPSGTVLEQFPE 313
            LCP+GT+  QFPE
Sbjct: 989  LCPNGTIFSQFPE 1001


>AY070551-1|AAL48022.1|  340|Drosophila melanogaster LD28119p
           protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +1

Query: 52  HPPPELSSTRTRIMWNENLHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRVVLRTI 231
           H P  L S        EN   +CLNL+VA  P  E + +    I+   GA    ++ R +
Sbjct: 268 HRPHGLLSVEHSASEQENTDGICLNLLVAFRPPLEEISLIGKCIWQELGAPLDEMLGRIV 327


>AE014297-1313|AAF54653.1|  340|Drosophila melanogaster CG10898-PA
           protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +1

Query: 52  HPPPELSSTRTRIMWNENLHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRVVLRTI 231
           H P  L S        EN   +CLNL+VA  P  E + +    I+   GA    ++ R +
Sbjct: 268 HRPHGLLSVEHSASEQENTDGICLNLLVAFRPPLEEISLIGKCIWQELGAPLDEMLGRIV 327


>AE014296-1887|AAN11896.1|  565|Drosophila melanogaster CG33048-PC,
           isoform C protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +3

Query: 105 FT*ALLEFSCGALPRKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPSD----GVQGPAR 272
           F  ++ E  CG   R R T DGN K    L G  E    +  R    S+     + G A 
Sbjct: 302 FITSMTEHFCGTCNRLRLTADGNIKVC--LFGNKEFSLRDAMRDESVSEEQLVDLIGAAV 359

Query: 273 QRV*RGRRHAAPRL 314
           QR  +    AAPRL
Sbjct: 360 QRKKKQHADAAPRL 373


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,311,636
Number of Sequences: 53049
Number of extensions: 286449
Number of successful extensions: 732
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 922092336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)