Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0307
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical...    45   2e-05
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   1.00 
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    29   1.00 
Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U88308-4|AAB42323.1|  299|Caenorhabditis elegans Hypothetical pr...    26   7.0  
EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      26   9.3  
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    26   9.3  
AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    26   9.3  

>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
            protein F25G6.2 protein.
          Length = 1143

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 31/102 (30%), Positives = 50/102 (49%)
 Frame = +1

Query: 55   PPPELSSTRTRIMWNENLHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIE 234
            PP  + S+     W + ++K  L +   L P    LL+ +A +Y  S    KRVVLR++E
Sbjct: 773  PPMYMRSSEDSDQWTDEMYKNSLAVYSTLMPSDPLLLIPLASVYAQSTNVFKRVVLRSLE 832

Query: 235  GPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGAETLL 360
             P+   +S+++                  L+E+CP GAETL+
Sbjct: 833  -PVFRQLSQEM---------------VISLIEDCPYGAETLV 858


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +3

Query: 144 PRKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPSDGVQGPARQRV*RGRRHAAPRLQGT 323
           P++ ++   +    R+ R  S+++     R   PS   Q P R+R   G +  +PR +  
Sbjct: 424 PKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPR-RRR 482

Query: 324 ARELSPRGRDS 356
           +   +PR R S
Sbjct: 483 SPAAAPRRRQS 493


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 34   GFISLNHPPPELSSTRTRIMWNENLHKLCLNLVVA 138
            G IS+  PPP +        W +N+ K C+++  A
Sbjct: 2326 GGISVADPPPTMDGLTNSYKWLQNIEKCCVDMFSA 2360


>Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical
           protein K10G4.4 protein.
          Length = 727

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
 Frame = +1

Query: 160 LLMEIARIYGSSGAEAKRVVLRTIE----GPIRAMVSK-DLP----DNEFDEDDATLRPA 312
           LL E+A++  S     K+  +R  E     PI  ++S+ D+       ++DEDD   +P 
Sbjct: 56  LLEEMAKMLKSRNVTLKKFSVRLFEMPSDDPIEKVISQLDVKVLVLKRDWDEDDEDKKPI 115

Query: 313 FRELLEN 333
           F +++E+
Sbjct: 116 FHQIVES 122


>U88308-4|AAB42323.1|  299|Caenorhabditis elegans Hypothetical
           protein C32E8.5 protein.
          Length = 299

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 123 EFSCGALPRKRRTTDGNSKDIRQLRGRSEARCTENHRGS-DPSDGVQGP 266
           +FS    PR+RR   G  +D R+   R + R   + RG  D  D  + P
Sbjct: 51  QFSDNDSPRRRRDDRGGRRDDRRDNRRDDRRDHRDDRGDRDRRDNFRRP 99


>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 226 TIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGA-ETLL 360
           T+E  IR + +  + D    E       A RE+L NCP  A E LL
Sbjct: 415 TVEQLIRVIANNFVTDRNSPEAMTVGINAIREILSNCPFAATEELL 460


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 226 TIEGPIRAMVSKDLPDNEFDEDDATLRPAFRELLENCPRGA-ETLL 360
           T+E  IR + +  + D    E       A RE+L NCP  A E LL
Sbjct: 415 TVEQLIRVIANNFVTDRNSPEAMTVGINAIREILSNCPFAATEELL 460


>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 246 SDRTLDGSQYNALRFCPGAAVYPCYF 169
           SDR  DG Q + LRF P A V+   F
Sbjct: 41  SDRIKDGIQKDLLRFIPYALVFITMF 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,075,333
Number of Sequences: 27780
Number of extensions: 143136
Number of successful extensions: 402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)