Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0307
(364 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 23 0.84
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 21 4.5
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 21 4.5
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 21 4.5
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 21 4.5
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 21 4.5
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 21 4.5
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 21 4.5
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 21 4.5
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 21 4.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 20 7.8
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 23.4 bits (48), Expect = 0.84
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +1
Query: 106 LHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFD 285
+ KLC + ++G + EI + G + + RT+E PI V FD
Sbjct: 598 IKKLCRDNPAERLGYQKGGISEIQKHKWFDGFNWEGLRARTLEPPIMPRVQNATDTTNFD 657
Query: 286 E 288
E
Sbjct: 658 E 658
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 265 GPWTPSLGSDPRWFSVQRASLLPR 194
GPW P PR+ + ++ PR
Sbjct: 138 GPWVPMQEQIPRFRHIGPSTPFPR 161
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 265 GPWTPSLGSDPRWFSVQRASLLPR 194
GPW P PR+ + ++ PR
Sbjct: 138 GPWVPMQEQIPRFRHIGPSTPFPR 161
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 265 GPWTPSLGSDPRWFSVQRASLLPR 194
GPW P PR+ + ++ PR
Sbjct: 138 GPWVPMQEQIPRFRHIGPSTPFPR 161
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 265 GPWTPSLGSDPRWFSVQRASLLPR 194
GPW P PR+ + ++ PR
Sbjct: 138 GPWVPMQEQIPRFRHIGPSTPFPR 161
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 265 GPWTPSLGSDPRWFSVQRASLLPR 194
GPW P PR+ + ++ PR
Sbjct: 138 GPWVPMQEQIPRFRHIGPSTPFPR 161
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.0 bits (42), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 265 GPWTPSLGSDPRWFSVQRASLLPR 194
GPW P PR+ + ++ PR
Sbjct: 138 GPWVPMQEQIPRFRHIGPSTPFPR 161
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.0 bits (42), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 265 GPWTPSLGSDPRWFSVQRASLLPR 194
GPW P PR+ + ++ PR
Sbjct: 141 GPWVPMQEQIPRFRHIGPSTPFPR 164
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 21.0 bits (42), Expect = 4.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 229 WFSVQRASLLPRSC 188
W V A++LP SC
Sbjct: 86 WHGVLNATVLPNSC 99
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.0 bits (42), Expect = 4.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 229 WFSVQRASLLPRSC 188
W V A++LP SC
Sbjct: 86 WHGVLNATVLPNSC 99
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 20.2 bits (40), Expect = 7.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 79 WCLKVPGADDSTI 41
+C+ VP +DSTI
Sbjct: 794 YCVPVPQVNDSTI 806
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,562
Number of Sequences: 438
Number of extensions: 1702
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8556345
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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