Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0307
         (364 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa...    29   1.2  
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa...    29   1.2  
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa...    29   1.2  
At5g49680.1 68418.m06151 cell expansion protein, putative simila...    28   1.6  
At4g17350.1 68417.m02602 expressed protein                             27   2.8  
At4g02750.1 68417.m00375 pentatricopeptide (PPR) repeat-containi...    27   2.8  
At4g24410.1 68417.m03500 expressed protein                             27   3.7  
At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containi...    27   3.7  
At1g13030.1 68414.m01511 sphere organelles protein-related conta...    27   3.7  
At1g12420.1 68414.m01435 ACT domain-containing protein (ACR8) co...    27   4.9  
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC...    26   6.5  
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC...    26   6.5  
At3g04980.1 68416.m00541 DNAJ heat shock N-terminal domain-conta...    26   6.5  
At2g29940.1 68415.m03642 ABC transporter family protein similar ...    26   6.5  
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    26   8.6  
At3g11310.1 68416.m01375 hypothetical protein                          26   8.6  

>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 436

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 49  NHPPPELSSTRTRIMWNENLHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRVVLRT 228
           N PP   S   TRI          LNL + +  E   + +E+ ++ G+S     R  ++T
Sbjct: 38  NDPPERSSEAVTRIRTRHRTRFRQLNLPIPVLSETHTMAIELNQLMGNS---VNRAAMQT 94

Query: 229 IEGPIR 246
            EG  R
Sbjct: 95  GEGSER 100


>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 436

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 49  NHPPPELSSTRTRIMWNENLHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRVVLRT 228
           N PP   S   TRI          LNL + +  E   + +E+ ++ G+S     R  ++T
Sbjct: 38  NDPPERSSEAVTRIRTRHRTRFRQLNLPIPVLSETHTMAIELNQLMGNS---VNRAAMQT 94

Query: 229 IEGPIR 246
            EG  R
Sbjct: 95  GEGSER 100


>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 436

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 49  NHPPPELSSTRTRIMWNENLHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRVVLRT 228
           N PP   S   TRI          LNL + +  E   + +E+ ++ G+S     R  ++T
Sbjct: 38  NDPPERSSEAVTRIRTRHRTRFRQLNLPIPVLSETHTMAIELNQLMGNS---VNRAAMQT 94

Query: 229 IEGPIR 246
            EG  R
Sbjct: 95  GEGSER 100


>At5g49680.1 68418.m06151 cell expansion protein, putative similar to
            SABRE [Arabidopsis thaliana] GI:719291
          Length = 1378

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 154  EGLLMEIARIYGSSGAEAKRVVLRTIEGPIRAMVSKDLPDNEFD 285
            +G +  I  I+ +   +AK+ VLRT+ G        +  DNE D
Sbjct: 1264 DGFVTSIRGIFNTQRRKAKKFVLRTMRGEAEDNFPGEWSDNESD 1307


>At4g17350.1 68417.m02602 expressed protein 
          Length = 405

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 117 LLEFSCGALPRKRRTTDGNSKDIRQLRGRSEARCT 221
           LLEF C +   K+R  DG    +RQ+     A+C+
Sbjct: 361 LLEFKCKSKIHKQRWVDGVQSLLRQVNCFEAAKCS 395


>At4g02750.1 68417.m00375 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 781

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 82  TRIMWNENLHKLCLNLVVALFPEKEGLLMEIARIYGSSG 198
           +R+  N  L +   + + A+ PE  G+ + ++ +Y SSG
Sbjct: 588 SRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSG 626


>At4g24410.1 68417.m03500 expressed protein 
          Length = 169

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 153 RRTTDGNSKDIRQLRGRSEARCTENHRGSD 242
           RR T G S+D+R ++ + EAR  E    S+
Sbjct: 131 RRKTVGKSRDVRPIQEKREARARERASESE 160


>At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 681

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 97  NENLHKLCLNLVVALFPEKEGLLMEIARIYGSSGAEAKRVVLRTI 231
           N  + K     ++ + PE  G  + IA +Y ++G+ +K   +RTI
Sbjct: 566 NTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTI 610


>At1g13030.1 68414.m01511 sphere organelles protein-related contains
           weak similarity to Swiss-Prot:Q09003 sphere organelles
           protein SPH-1 (Sphere protein 1) [Xenopus laevis]
          Length = 608

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 277 EFDEDDATLRPAFRELLENCPRGAETLL 360
           +F+ED AT +PA  E L NCP   E L+
Sbjct: 388 DFNED-ATTQPAEAETLANCPIDYEQLV 414


>At1g12420.1 68414.m01435 ACT domain-containing protein (ACR8)
           contains Pfam ACT domain PF01842
          Length = 441

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 145 PEKEGLLMEIARIYGSSGAEAKRVVLRT 228
           P+K+GLL E+ R +  +G    R  + T
Sbjct: 332 PDKQGLLAEVTRTFRENGLNVTRTEIST 359


>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +3

Query: 147 RKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPSDGVQGPARQRV*RGRRHAAPRLQGTA 326
           R+ R+   +  + R++RGR +     + R    S     PAR    R  R ++P+    A
Sbjct: 182 RRTRSRSASPDEKRRVRGRYDNESRSHSRSLSAS-----PAR----RSPRSSSPQKTSPA 232

Query: 327 RELSPRGRDS 356
           RE+SP  R +
Sbjct: 233 REVSPDKRSN 242


>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +3

Query: 147 RKRRTTDGNSKDIRQLRGRSEARCTENHRGSDPSDGVQGPARQRV*RGRRHAAPRLQGTA 326
           R+ R+   +  + R++RGR +     + R    S     PAR    R  R ++P+    A
Sbjct: 182 RRTRSRSASPDEKRRVRGRYDNESRSHSRSLSAS-----PAR----RSPRSSSPQKTSPA 232

Query: 327 RELSPRGRDS 356
           RE+SP  R +
Sbjct: 233 REVSPDKRSN 242


>At3g04980.1 68416.m00541 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 1165

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 165 DGNSKDIRQLRGRSEARCTENHRGSDPSDGVQG 263
           DG S D+ +LR     +   NH+G +     QG
Sbjct: 778 DGESTDVFRLRKSPRLQTIPNHQGDEKKSAKQG 810


>At2g29940.1 68415.m03642 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1426

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 216 CTENHRGSDPSDGVQGPARQRV*RGRRHAAPRLQGTARELSPRGRDSA 359
           C++   G+D   GV G  R+RV  G     PR      E+S  G DS+
Sbjct: 320 CSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEIS-TGLDSS 366


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 259 WTPSLGSDPRWFSVQR 212
           W P LG DP W S+ +
Sbjct: 25  WNPYLGFDPEWDSISK 40


>At3g11310.1 68416.m01375 hypothetical protein
          Length = 539

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 76  TRTRIMWNENLHKLCLNLVV 135
           TR ++MW   LHK+ ++L V
Sbjct: 2   TREKVMWEPELHKVFVDLCV 21


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,730,106
Number of Sequences: 28952
Number of extensions: 135270
Number of successful extensions: 434
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)