Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0306
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    27   0.20 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    27   0.20 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    27   0.20 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    27   0.20 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   4.2  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   4.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   4.2  
AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    21   7.4  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 426 RKSPIKCSSGSSLETRSLKATLKLLSIIS 512
           R  PIK  SGS    + L+ T+K+L I++
Sbjct: 46  RDPPIKEESGSMANQKCLEITVKILKIVA 74


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 426 RKSPIKCSSGSSLETRSLKATLKLLSIIS 512
           R  PIK  SGS    + L+ T+K+L I++
Sbjct: 46  RDPPIKEESGSMANQKCLEITVKILKIVA 74


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 426 RKSPIKCSSGSSLETRSLKATLKLLSIIS 512
           R  PIK  SGS    + L+ T+K+L I++
Sbjct: 46  RDPPIKEESGSMANQKCLEITVKILKIVA 74


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 426 RKSPIKCSSGSSLETRSLKATLKLLSIIS 512
           R  PIK  SGS    + L+ T+K+L I++
Sbjct: 46  RDPPIKEESGSMANQKCLEITVKILKIVA 74


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 329 FKFGEISRDGSVQILATDYNNYAIAYNCK 415
           F FG  + +G        YNN +    CK
Sbjct: 15  FHFGAFTCEGCKSFFGRTYNNISSISECK 43


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 377 TDYNNYAIAYNCKY 418
           ++YNNY   ++C+Y
Sbjct: 222 SNYNNYQEGFSCQY 235


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 377 TDYNNYAIAYNCKY 418
           ++YNNY   ++C+Y
Sbjct: 242 SNYNNYQEGFSCQY 255


>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 274 FYILLDAVDDMHVLDLHH 221
           + I  D +  +H+ DLHH
Sbjct: 79  YLIPKDTITIIHIYDLHH 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,556
Number of Sequences: 336
Number of extensions: 2687
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)