Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0306
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  39   0.005
SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)                     31   0.68 
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)                 30   2.1  
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    29   4.8  
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)              29   4.8  
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)                    29   4.8  
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
 Frame = +2

Query: 80  GTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD----VVKVKN 238
           G C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L  D    VV    
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGKIGVVNSNR 292

Query: 239 VHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQIL 373
               DG  K I G A    D     KL V   F  +  +GS  IL
Sbjct: 293 DKKPDGELKQITGYA-YQPDPEVPGKLKV--HFDTVPVEGSYWIL 334


>SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 791

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 21/110 (19%), Positives = 42/110 (38%)
 Frame = +2

Query: 164 NESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGE 343
           N  +  G+  + EY L    +++ N  I D + K      ++ +  +K   +        
Sbjct: 397 NSMQGKGRRRNREYLLHVSYLEIYNEEIRDLLVKNTRSNLEIKEHPDKGMYVKGLSSITV 456

Query: 344 ISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAK 493
              +   +IL     N ++   C   D  +SH +F+  L  N    G+ +
Sbjct: 457 DCYEDMAEILEIGSANRSVGSTCMNTDSSRSHSIFIIDLQVNVNKGGEGE 506


>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
          Length = 442

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 156 NFPTNLRRTANALQLNTNWKVTW*RSRTCISSTASRSI*KGR 281
           NF T      +AL++   W VTW R   C  +T S  +  GR
Sbjct: 33  NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 335 FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 466
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 547


>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
          Length = 264

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 335 FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 466
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 245


>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
          Length = 395

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
 Frame = +2

Query: 278 TAKLTDDANKAAKLTVTFK--FGEISRDGSV-QILATDYNNYAIAYNCKYDDKKKSHQVF 448
           T ++T+  +      + FK    EIS+ G+V +++ATD  +  I  + K +  +  HQ  
Sbjct: 129 TVQVTEAGSSNGMERLGFKNCMDEISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFD 187

Query: 449 VWILSRN--KKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTS 592
           VW ++++  KKL   AK    N +    K + +    H  +   AC+ +S
Sbjct: 188 VWHMAKSVTKKLTEAAKKKDTNDLLPWIKSVSN----HLWWCASACEGSS 233


>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1950

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
 Frame = +2

Query: 92  ELKPVNNFN-LTAYQGIWYEISKFPNESEKNGKCSSAEYKLE-GDVVKVKNV--HIIDGV 259
           ++ P+N  + + AY  I Y+I K  ++ E +GK   +  ++  G++ K  +    +I+  
Sbjct: 592 KVTPLNKVDEIAAYHNICYDIGK--SKGECDGKMVESLDRIPYGEMPKWGSTARFLINAK 649

Query: 260 KKYIEGTAKLTDDANKAAKLTVTF--KF------GEISRDGSVQILATDYNNYAIAYNCK 415
           +K   G  K  +  ++  K+   F  KF      G +S D  V + +   NNY +  +  
Sbjct: 650 RKLGLGVKKPKNGKSRRVKICSGFAIKFKSPKESGRLSDDQQVMLQSNKDNNYKVMASND 709

Query: 416 YDD 424
           YD+
Sbjct: 710 YDE 712


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,759,675
Number of Sequences: 59808
Number of extensions: 368942
Number of successful extensions: 977
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)