Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0306
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical pr... 34 0.086
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 34 0.086
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 34 0.086
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 34 0.086
AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated... 34 0.086
AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type chlo... 34 0.086
Z68270-5|CAA92570.1| 174|Caenorhabditis elegans Hypothetical pr... 32 0.46
Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL117195-3|CAB55009.1| 629|Caenorhabditis elegans Hypothetical ... 29 2.4
U42848-7|AAA83612.2| 567|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 29 3.2
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 29 3.2
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 29 3.2
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 29 3.2
>Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical
protein R07B7.1 protein.
Length = 796
Score = 34.3 bits (75), Expect = 0.086
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 314 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 472
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 34.3 bits (75), Expect = 0.086
Identities = 32/144 (22%), Positives = 67/144 (46%)
Frame = +2
Query: 146 EISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTV 325
++SK NE E K SA+ L +++K KN + + + E + + ++ + T+
Sbjct: 1291 KLSKMNNELESIQKAKSADETLNSNLLK-KNASLDMQLSELTEAS-----EEDRRTRATL 1344
Query: 326 TFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVD 505
K ++ D +V + A D A + + +K+ +V + KKL+ + + ++
Sbjct: 1345 NNKIRQLEEDLAVAVEARDD-----ALDAQEKIEKEVKEVKSLLAEARKKLDEENREVME 1399
Query: 506 NFIKEHSKEIDSSKLVHTDFSEEA 577
K+ KE+ + K D +E+A
Sbjct: 1400 ELRKKKEKELSAEK-ERADMAEQA 1422
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 34.3 bits (75), Expect = 0.086
Identities = 32/144 (22%), Positives = 67/144 (46%)
Frame = +2
Query: 146 EISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTV 325
++SK NE E K SA+ L +++K KN + + + E + + ++ + T+
Sbjct: 1291 KLSKMNNELESIQKAKSADETLNSNLLK-KNASLDMQLSELTEAS-----EEDRRTRATL 1344
Query: 326 TFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVD 505
K ++ D +V + A D A + + +K+ +V + KKL+ + + ++
Sbjct: 1345 NNKIRQLEEDLAVAVEARDD-----ALDAQEKIEKEVKEVKSLLAEARKKLDEENREVME 1399
Query: 506 NFIKEHSKEIDSSKLVHTDFSEEA 577
K+ KE+ + K D +E+A
Sbjct: 1400 ELRKKKEKELSAEK-ERADMAEQA 1422
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 34.3 bits (75), Expect = 0.086
Identities = 32/144 (22%), Positives = 67/144 (46%)
Frame = +2
Query: 146 EISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTV 325
++SK NE E K SA+ L +++K KN + + + E + + ++ + T+
Sbjct: 1291 KLSKMNNELESIQKAKSADETLNSNLLK-KNASLDMQLSELTEAS-----EEDRRTRATL 1344
Query: 326 TFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVD 505
K ++ D +V + A D A + + +K+ +V + KKL+ + + ++
Sbjct: 1345 NNKIRQLEEDLAVAVEARDD-----ALDAQEKIEKEVKEVKSLLAEARKKLDEENREVME 1399
Query: 506 NFIKEHSKEIDSSKLVHTDFSEEA 577
K+ KE+ + K D +E+A
Sbjct: 1400 ELRKKKEKELSAEK-ERADMAEQA 1422
>AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated
chloride channelCLH-6 protein.
Length = 796
Score = 34.3 bits (75), Expect = 0.086
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 314 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 472
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type
chloride channel CLH-6 protein.
Length = 796
Score = 34.3 bits (75), Expect = 0.086
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 314 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 472
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>Z68270-5|CAA92570.1| 174|Caenorhabditis elegans Hypothetical
protein ZC410.5a protein.
Length = 174
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 131 QGIWYEISKFPNESEKNGK--CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDAN 304
QG+ ++ F + +N K S+ + +LE +V +VK+ ++ G+K+ ++G L +DA
Sbjct: 36 QGVTSDVGNFFSNQFQNAKDLFSNDQNELEKNVQRVKD--LLTGLKEKVKGLEPLANDAQ 93
Query: 305 KAAKLTVTFKFGEIS 349
K V E+S
Sbjct: 94 KETLKKVDGFLAEVS 108
>Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical
protein F29C12.5 protein.
Length = 468
Score = 30.3 bits (65), Expect = 1.4
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +2
Query: 149 ISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDG-VKKYIEGTAKL-TDDANKAAKLT 322
+S P +S KN S+ E+ VVK +N HI+ + + E KL D +A K
Sbjct: 129 MSGLPKKSPKNFDESNKEFSDGIVVVKHQNFHILKKFLAFHCEYLEKLFFGDFKEAGKAE 188
Query: 323 VTFKFGEISRDGSVQILATDYNNYAI 400
VT K IS +LA Y +YAI
Sbjct: 189 VTLK--AISSTDFHYLLAVLYEDYAI 212
>AL117195-3|CAB55009.1| 629|Caenorhabditis elegans Hypothetical
protein Y57A10A.4 protein.
Length = 629
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/90 (30%), Positives = 40/90 (44%)
Frame = +2
Query: 323 VTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAV 502
V +F E DG + Y +YA +N + K + I R + + G A
Sbjct: 31 VLTEFSESENDG-----LSHYAHYAKFHNYLVPNMAKLAEYS--IEERVRVIFGFAAVVS 83
Query: 503 DNFIKEHSKEIDSSKLVHTDFSEEACKFTS 592
D+F+K+ +E LVH D + CKFTS
Sbjct: 84 DDFLKQIQRE----GLVHLDKKKRICKFTS 109
>U42848-7|AAA83612.2| 567|Caenorhabditis elegans Hypothetical
protein C31H1.8 protein.
Length = 567
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 425 KKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSK 529
K S V+ + SRN+KLE + A+D+F++ SK
Sbjct: 240 KMHSDYVYAIVHSRNEKLERRLRGAIDSFMEIESK 274
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 80 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 214
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 80 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 214
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 80 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 214
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 80 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 214
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,055,522
Number of Sequences: 27780
Number of extensions: 271262
Number of successful extensions: 870
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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