Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0306
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    57   1e-08
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil...    31   0.74 
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i...    30   1.3  
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    29   2.3  
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    29   3.9  
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   3.9  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   3.9  
At5g36740.1 68418.m04402 PHD finger family protein                     28   5.2  
At5g36670.1 68418.m04388 PHD finger family protein                     28   5.2  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    28   5.2  
At2g30740.1 68415.m03749 serine/threonine protein kinase, putati...    28   6.9  
At1g06700.1 68414.m00712 serine/threonine protein kinase, putati...    28   6.9  
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    27   9.1  
At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 famil...    27   9.1  
At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 famil...    27   9.1  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 3/163 (1%)
 Frame = +2

Query: 92  ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKK 265
           E++ V   N+  Y G WYEI+ FP+  + KNG  + A Y L  D  + V N    +G + 
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 266 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQV 445
           +IEG+A   D  +  AKL V F          +  +  DY    I  + ++    +  + 
Sbjct: 66  FIEGSAYKADPKSDEAKLKVKFYVPPFL---PIIPVTGDYWVLYIDPDYQHALIGQPSRS 122

Query: 446 FVWILSRNKKLEGDA-KTAVDNFIKEHSKEIDSSKLVHTDFSE 571
           ++WILSR  ++E +  K  V+  ++E     D SKL  T  S+
Sbjct: 123 YLWILSRTAQMEEETYKQLVEKAVEE---GYDISKLHKTPQSD 162


>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646; supporting cDNA
           gi|13160645|dbj|AB036832.1|;
          Length = 876

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +2

Query: 173 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 352
           EK+GK SS   K +  +  V+   ++D +++  E    L     K++K T   K   ++ 
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKTK--KKDSLNI 572

Query: 353 DGSVQILATDYNNYA 397
               Q+L+ + NN A
Sbjct: 573 VEEAQVLSVEVNNVA 587


>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
            identical to cDNA CIP4.1 mRNA for COP1-interacting
            protein 4.1,  GI:13160649
          Length = 976

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 25/130 (19%), Positives = 57/130 (43%)
 Frame = +2

Query: 173  EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 352
            EK+GK SS   K +  +  V+   ++D +++  E    L     K++K +   K   ++ 
Sbjct: 665  EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSK--KKDSLNI 722

Query: 353  DGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKE 532
                Q+L+ + NN A       ++ K +  +F       +      K  ++  + +++++
Sbjct: 723  VEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIE--VTDNTED 780

Query: 533  IDSSKLVHTD 562
            I+ S  V  +
Sbjct: 781  INRSMQVQKE 790


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 104 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 241
           V NFN++ + G WY I+   N +     C   E+  EGD   V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 266 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIA 403
           Y   +  ++    KA      F  G  ++DG   IL  DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654


>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 473 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 556
           +L+G  K  V  F+KEH+  + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 473 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 556
           +L+G  K  V  F+KEH+  + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142


>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 188  CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 295
            C    Y  EGD  +  N+ ++DG  +  E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 188  CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 295
            C    Y  EGD  +  N+ ++DG  +  E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +2

Query: 149 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 247
           +S FP ES+ + K ++ E+KL G  + V VKN+++
Sbjct: 14  VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48


>At2g30740.1 68415.m03749 serine/threonine protein kinase, putative
           similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
           esculentum] gi|3668069|gb|AAC61805
          Length = 366

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 655 PRNASSIFSVLMFSVFGYHAGAGKFAGFL*KIGMHKFRRVYLFGVLLDEII 503
           P NA+ + S  +   FGYHA      G L      +   VY FGV+L E++
Sbjct: 229 PDNAARLHSTRVLGTFGYHAPEYAMTGQL-----TQKSDVYSFGVVLLELL 274


>At1g06700.1 68414.m00712 serine/threonine protein kinase, putative
           similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
           esculentum] gi|3668069|gb|AAC61805
          Length = 361

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 655 PRNASSIFSVLMFSVFGYHAGAGKFAGFL*KIGMHKFRRVYLFGVLLDEII 503
           P NA+ + S  +   FGYHA      G L      +   VY FGV+L E++
Sbjct: 226 PDNAARLHSTRVLGTFGYHAPEYAMTGQL-----TQKSDVYSFGVVLLELL 271


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 461 SRNKKLEGDAKTAVDNFIKEHSKE 532
           +R +K EG+  TA    I+EHSK+
Sbjct: 548 NRKRKAEGECSTAETESIEEHSKD 571


>At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 312

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 212 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYN 388
           EGDV++VKN+ ++ G   K    T    D +N  A L  T +       G    +   YN
Sbjct: 91  EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDT--IMVPYN 148

Query: 389 N 391
           N
Sbjct: 149 N 149


>At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 280

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 212 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYN 388
           EGDV++VKN+ ++ G   K    T    D +N  A L  T +       G    +   YN
Sbjct: 59  EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDT--IMVPYN 116

Query: 389 N 391
           N
Sbjct: 117 N 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,308,657
Number of Sequences: 28952
Number of extensions: 255675
Number of successful extensions: 814
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)