Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0305
         (469 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   2.5  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   7.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.5  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   7.5  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    20   9.9  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 233 STTWDGSLRSASVTSGVSCKQSSRNKP 153
           S TW  SLR+A +   +S  +   + P
Sbjct: 270 SNTWQNSLRAADIQPTLSSIRHPESNP 296


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 310 KYEEDSLYLTPIVEQVEKERLE 375
           KY++D +Y     + +EKE ++
Sbjct: 107 KYDKDGVYRQKYKDVIEKEGIK 128


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 396 ILNETWHSGI 425
           +LNE WH G+
Sbjct: 463 LLNEGWHKGM 472


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 247 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKE 366
           +I R I     + I  +  W K  ED      +V +V+KE
Sbjct: 245 QITRRIAAVASEKIKNEIIWKKLREDYTRQCRLVRKVDKE 284


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 75  HHGSCSKSHFIDSQIYDFN 19
           +  S  K+   D Q+Y FN
Sbjct: 58  YFASLEKNPLFDGQLYSFN 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,737
Number of Sequences: 336
Number of extensions: 2001
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)