Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0305
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subu...    86   3e-18
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   1.9  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   2.5  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   3.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   4.4  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   4.4  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   7.6  

>SPCC737.02c |qcr7||ubiquinol-cytochrome-c reductase complex subunit
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 137

 Score = 85.8 bits (203), Expect = 3e-18
 Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = +1

Query: 130 NLSGFNKYGLLRDDC-LHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEW 306
           +LSG+ KYGL  DD  L E  D  +AL RLP     +R +RI RA+QLS++  ILPK EW
Sbjct: 29  HLSGYRKYGLRYDDLMLEENDDTQKALSRLPKMESYDRVYRIRRAMQLSIENKILPKSEW 88

Query: 307 TKYEEDSLYLTPIVEQVEKERLEREQWE 390
           TK EED  YL P++ +V  ER ERE ++
Sbjct: 89  TKPEEDYHYLRPVLAEVIAERKEREAFD 116


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 75  HHGSCSKSHFIDSQIYDFNVILT 7
           HHGS SK H I  Q+  ++++LT
Sbjct: 474 HHGS-SKKHKIAEQLMSYDIVLT 495


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = +1

Query: 247 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQW 387
           R+ + +  S ++  +  ++ + YE D   LT  + ++E E + ++ W
Sbjct: 278 RVKKDLFASDEEDDVSADQLSSYERDKARLTQQIRELEAENVAKKSW 324


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 235 RQQHGMEVCGVLQLHQEFHASNHPV 161
           + +HG  VC    L+   H  N P+
Sbjct: 432 KDRHGQTVCNACGLYARLHGHNRPI 456


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 118 KWAYNLSGFNKYGLLRDD 171
           KW + +  F++YGLL D+
Sbjct: 926 KWIFKVQHFSRYGLLDDE 943


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 135 KIVGPFAEAVTSVNSRGSESHHGSCSKSH-FIDSQIYDFN 19
           K + P ++ +T  N + + SH GS +KSH F    ++D N
Sbjct: 320 KELSPHSQ-ITLSNVKNNHSHVGSQTKSHSFATPSVFDNN 358


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 295 KEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 396
           +E+ T YEED +       QV++E LE E+ E+E
Sbjct: 58  EEDDTNYEED-IIDDEESAQVDEEELEEEEEEEE 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,731
Number of Sequences: 5004
Number of extensions: 33617
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)