Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0305
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061... 60 9e-10
07_01_0744 + 5687269-5687365,5687466-5687689,5688307-5688354,568... 48 4e-06
08_01_0907 + 8949102-8949160,8949662-8949842,8951816-8951941,895... 39 0.002
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253... 33 0.15
11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120 29 2.5
03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080 28 4.3
05_06_0025 + 25018426-25018596,25018692-25018892,25018983-250192... 27 5.7
11_01_0771 + 6453130-6454488 27 7.5
08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119 27 7.5
10_08_0672 + 19762340-19762432,19762543-19762735,19763225-197632... 27 10.0
07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529... 27 10.0
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 27 10.0
>03_06_0379 +
33505242-33505347,33505474-33505631,33506127-33506174,
33506851-33506919
Length = 126
Score = 60.1 bits (139), Expect = 9e-10
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Frame = +1
Query: 136 SGFNKYGLLRDDCL---HETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEW 306
S KYGL DD H+ D+ EAL RLP VVD R+ R+ RA+ LSM+ L + +
Sbjct: 30 SRLRKYGLRYDDLYDPKHDL-DIKEALERLPREVVDARHQRLKRAMDLSMKHQYLSENDQ 88
Query: 307 TKYEEDSLYLTPIVEQVEKERLEREQ 384
+ YL+ +++ V+KERLERE+
Sbjct: 89 AQQTPFRGYLSDMMDLVKKERLEREE 114
>07_01_0744 +
5687269-5687365,5687466-5687689,5688307-5688354,
5689057-5689125
Length = 145
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 136 SGFNKYGLLRDDCL--HETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKE 300
S KYGL DD + D+ EAL RLP VVD RN R+ RA+ LSM+ LP +
Sbjct: 27 SRLRKYGLRYDDLYDPYHDLDIKEALARLPREVVDARNQRLKRAMDLSMKHQYLPAD 83
>08_01_0907 +
8949102-8949160,8949662-8949842,8951816-8951941,
8952082-8952092,8952237-8952360,8952447-8952546,
8952807-8952849,8953033-8953153
Length = 254
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +1
Query: 148 KYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 303
+Y L D + D+ EAL RLP VVD N R+ R + LS + LP +E
Sbjct: 28 RYDDLFDAYQYHGLDIKEALARLPREVVDAHNQRLKRTMDLSTKHQYLPADE 79
>06_03_0540 -
21923763-21923945,21924027-21924776,21924895-21925323,
21925509-21925619,21925715-21926040,21926130-21926251,
21926905-21927020,21927119-21927243,21927338-21927596
Length = 806
Score = 32.7 bits (71), Expect = 0.15
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 148 KYGLLRDDCLHETPDVTEALRR---LPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYE 318
K +L +C E V +AL R L V DE+ + ++ M KT+ +E ++K++
Sbjct: 353 KIKVLSSECTEEAKKVQDALHREELLKQKVADEKTRHLEAVTEVEMAKTLFAQEAFSKHK 412
Query: 319 EDSLYLTPIVEQVE 360
+ + I E+ +
Sbjct: 413 AEIVADMVIAEKTK 426
>11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120
Length = 361
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 229 VDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 393
+D +F +V L+ +K L KEEW + + + + +KE ERE+ EK
Sbjct: 216 IDIYSFGVVMLEVLTGKKPYLFKEEWKEEKREKCEQDGKNTEEDKEESEREEEEK 270
>03_06_0102 + 31656268-31656304,31656625-31656920,31657967-31658080
Length = 148
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 136 SGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAI-QLSMQKTILPKEE 303
SG++K G+ +H TP EAL R+ + R R + + +LS+ I PK++
Sbjct: 46 SGYDKAGMDSGKYVHYTPGQVEALERVYAECPKPRFSRRQQLLCELSILANIEPKQK 102
>05_06_0025 +
25018426-25018596,25018692-25018892,25018983-25019236,
25019468-25019540,25019659-25019715,25020219-25020298,
25020386-25020448,25020678-25020765,25021055-25021156,
25021296-25021369,25021690-25021754,25021933-25022096,
25022179-25022246,25022337-25022397,25022729-25022766,
25023154-25023329,25023747-25023859,25023944-25023955
Length = 619
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Frame = +1
Query: 136 SGF-NKYGLLRDDCLH------ETPDVTEALRRLPSHVVDER 240
+GF N YGL RDD E D+ ALR P H+V E+
Sbjct: 320 NGFINYYGLQRDDIREMREHYKEHGDIDMALRNFPRHLVAEK 361
>11_01_0771 + 6453130-6454488
Length = 452
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 245 SVLYVPYSSPCKKQSYLKKSGQNMKKIPYT*PQLLSKLRKRG 370
+V VPY S Q G + K+ Y P+LL RKRG
Sbjct: 241 AVADVPYMSSRSYQRVAVHDGFKVLKLRYRSPRLLRDKRKRG 282
>08_02_1154 - 24727668-24728275,24728503-24728844,24730216-24731119
Length = 617
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 337 TPIVEQVEKERLEREQWEKEY*MRHGIVV 423
TP+V +V K+R E++ EK + HG+++
Sbjct: 322 TPLVARVVKQRREKKLKEKFFKQNHGLLL 350
>10_08_0672 +
19762340-19762432,19762543-19762735,19763225-19763269,
19763381-19763432,19763601-19763704,19763887-19763987,
19764225-19764283,19764536-19764592,19764944-19764989,
19765187-19765266,19766841-19767096,19767210-19767405,
19768368-19768448,19768536-19768587,19768759-19768862,
19769586-19769686,19769924-19769982,19770491-19770536,
19770789-19770868,19770953-19771013
Length = 621
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 335 KYRESSSYFVHSSLGRIVFCMESC 264
K R S ++F+H++ +V C+ESC
Sbjct: 246 KERYSVAFFLHTNPDLVVQCLESC 269
>07_03_1525 +
27448257-27448582,27450741-27450973,27451280-27452919,
27453129-27453575
Length = 881
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +1
Query: 157 LLRDDCLHETPDVTE--------ALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTK 312
LLR+ CLH P++TE LR + ++D + I LS Q L EE+++
Sbjct: 707 LLRNMCLHAQPELTELDLKELSQTLREVLERIMDAEGAELEILIGLSSQICKLIPEEFSQ 766
Query: 313 YEE 321
E
Sbjct: 767 QLE 769
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 235 ERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKEY 399
+R RI + L +K E+W + + + I E++++ +E +Q E+EY
Sbjct: 522 DRLSRIEAELSLLKEKQKDLTEQWEREKSVMTKIQSIKEEIDRVNVEIQQAEREY 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,670,025
Number of Sequences: 37544
Number of extensions: 199689
Number of successful extensions: 659
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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