Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0305
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)              94   6e-20
SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)                31   0.48 
SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)         29   1.5  
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         29   1.5  
SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)             29   2.5  
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)                     28   3.4  
SB_44511| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11)          27   5.9  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   27   7.7  

>SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)
          Length = 116

 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 44/98 (44%), Positives = 63/98 (64%)
 Frame = +1

Query: 103 SDSLSKWAYNLSGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQK 282
           S +  +W     G+ + GL R+D + E  DV EA+RR+P    + RNFRIVRAI  +M+ 
Sbjct: 19  SAAFREWYIYACGYRQIGLKREDLIIEDSDVAEAVRRIPEEERNLRNFRIVRAIDTTMKM 78

Query: 283 TILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 396
             LP+E WTK  ED  YL P++++V+ ER ERE W+K+
Sbjct: 79  KWLPEELWTKPSEDVPYLDPVIQKVKAERKERELWDKQ 116


>SB_3002| Best HMM Match : Pkinase (HMM E-Value=4.1e-17)
          Length = 683

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 157 LLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYE 318
           LL +  LH+ PD  +AL +   + + +  FRI +A+  S +K I  +  +  Y+
Sbjct: 343 LLAEPALHKDPDTIKALWKATVNELGDLEFRIQQAMTSSSKKPIAEEYSFLVYD 396


>SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)
          Length = 1935

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 166  DDCLHETPDVTEALRRLPS--HVVDERNFRIVRAIQLSMQ-KTILPKEEWTKYEED 324
            DDCLH TP   EA+R       ++    FR+ + +  S +  + LP+ E T   +D
Sbjct: 1166 DDCLHSTPTEAEAVRLATDLRELLARGGFRLTKFVSNSKELLSSLPESERTTSVKD 1221


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 268 LSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE-QWEKEY 399
           LS + T  P +  T  E+D L L   + Q EK+  ER+ +W + Y
Sbjct: 102 LSSEPTQQPTKPLTVQEQDDLALAQALAQSEKDEAERKRRWGESY 146


>SB_36418| Best HMM Match : Ion_trans (HMM E-Value=3.5e-28)
          Length = 466

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 268 LSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLERE 381
           LS  KT LPKE+W K E++S    P V Q ++   +R+
Sbjct: 8   LSPPKT-LPKEQWAKREKNSEGFKPGVMQEKRTLFKRD 44


>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
          Length = 2114

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +1

Query: 262  IQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 396
            I+ S+QKT  PK++  + E+D        E+ EK++ ++E  E++
Sbjct: 1868 IEKSLQKTFHPKKKENEEEDDKKEKKEENEEEEKKKKKKENEEED 1912


>SB_44511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 271 SMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 396
           S +  +L ++E  K EE  + LTP  ++    +LE+++ EKE
Sbjct: 8   SNEHLLLNEKEPPKKEEPKIVLTPEEQEELDRKLEKQRMEKE 49


>SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11)
          Length = 378

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 245 KFLSSTTWDGSLRSASVTSGVSCKQSSRNKP 153
           +++   +WD SL      +GV+C    RN+P
Sbjct: 223 RYVIEGSWDKSLECIPQDTGVTCPTDCRNRP 253


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 25/78 (32%), Positives = 32/78 (41%)
 Frame = +1

Query: 181  ETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVE 360
            ET  V E    L  H   +R    V +    + K  +   E    EEDS     I EQ E
Sbjct: 2577 ETSTVQEVFVPLRDHSEKDREETTVISKSTLIHKVNVDATEVRSLEEDSEEY--IEEQEE 2634

Query: 361  KERLEREQWEKEY*MRHG 414
            KE LER++   E  +  G
Sbjct: 2635 KELLERKRRASEEELMQG 2652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,644,163
Number of Sequences: 59808
Number of extensions: 243507
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)