Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0305
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-9|AAF39958.1|  130|Caenorhabditis elegans Hypothetical ...    74   6e-14
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical pr...    31   0.41 
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    29   1.3  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    29   1.3  
U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t prot...    29   2.2  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    29   2.2  
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    29   2.2  
AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF078157-8|AAG24076.1|  409|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z72506-5|CAA96616.2|  259|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical ...    27   5.1  
AC024791-3|AAF60673.1|  468|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AC006684-9|AAF39958.1|  130|Caenorhabditis elegans Hypothetical
           protein T02H6.11 protein.
          Length = 130

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
 Frame = +1

Query: 103 SDSLSKWAY-NLSGFNKYGLLRDDCLHE-TPDVTEALRRL---PSHVVDERNFRIVRAIQ 267
           + +L K+A+ NL G  +YGL   D   E  P+VTEALRRL     HV D+R  R+ RA  
Sbjct: 19  ASTLRKFAWSNLWGGREYGLQFHDTYFEPAPEVTEALRRLNLQEPHVFDQRKIRLSRAHT 78

Query: 268 LSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQ 384
           L++    LPK EWT+++++S YL P ++++E E+  R +
Sbjct: 79  LALHGEKLPKAEWTQWDQESWYLKPYLDEIEAEKKARAE 117


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical protein
            F11C1.5a protein.
          Length = 1804

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
 Frame = +1

Query: 115  SKWAYNLSGFNKYGL------LRDDCLHETPDVTE-ALRRLPSHVVDERN-------FRI 252
            ++W     G+N  GL       R D  H+   + + A +++P H++ +          + 
Sbjct: 1466 NQWMGGTGGYNTAGLGGIGGPFRLDAGHDVHQMPDFAKQQVPKHILKKAREIAKVEYAKK 1525

Query: 253  VRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 393
            +R I +S       ++ W K +  S  L  +++Q+E ++ ERE W K
Sbjct: 1526 LREINMSEYDADAYEKVWNKVQAPSRKLASVIDQLEAKKKERE-WTK 1571


>Z22181-1|CAA80179.1|  710|Caenorhabditis elegans Hypothetical
           protein ZK632.2 protein.
          Length = 710

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +1

Query: 226 VVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKE 396
           ++D  N       +L MQ+  L   ++   E+D LYL     Q+EK+R +R+QW +E
Sbjct: 347 ILDTYNVLRKSNTKLRMQRKTLEANDYYD-EDDDLYLDR-TGQLEKQREKRKQWAEE 401


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 268 LSMQKTILPKEEWTKYEEDSLYLTPIVE--QVEKERLEREQWEKE 396
           LS+ K +L K++  + E++ L         Q EKERLERE  EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 268 LSMQKTILPKEEWTKYEEDSLYLTPIVE--QVEKERLEREQWEKE 396
           LS+ K +L K++  + E++ L         Q EKERLERE  EKE
Sbjct: 216 LSLIKEMLKKQQEEREEQERLQKEQQERDAQEEKERLEREHAEKE 260


>U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t protein
           3, isoform c protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 307 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 396
           T+ E++   L  + E+ EK +LEREQ EKE
Sbjct: 81  TEREKEEEELKKLKEKQEKRKLEREQEEKE 110


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
            3, isoform b protein.
          Length = 1178

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 307  TKYEEDSLYLTPIVEQVEKERLEREQWEKE 396
            T+ E++   L  + E+ EK +LEREQ EKE
Sbjct: 915  TEREKEEEELKKLKEKQEKRKLEREQEEKE 944


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 307 TKYEEDSLYLTPIVEQVEKERLEREQWEKE 396
           T+ E++   L  + E+ EK +LEREQ EKE
Sbjct: 81  TEREKEEEELKKLKEKQEKRKLEREQEEKE 110


>AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical
           protein F19B2.8 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 215 FHPMLLTRETSVLYVPYSSPCKKQSYLKKSGQN 313
           FH +LL   TS+LY+P     +K SYL  S +N
Sbjct: 199 FHSILLIA-TSLLYIPIMRHVRKFSYLPSSQKN 230


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 190 DVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 303
           D ++ LR+  SH++ ER+F +  AIQL+    +  +E+
Sbjct: 319 DTSQNLRKNVSHLIQERHFEL--AIQLAENSNLFAEEQ 354


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 190 DVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEE 303
           D ++ LR+  SH++ ER+F +  AIQL+    +  +E+
Sbjct: 319 DTSQNLRKNVSHLIQERHFEL--AIQLAENSNLFAEEQ 354


>AF078157-8|AAG24076.1|  409|Caenorhabditis elegans Hypothetical
           protein F25E5.5 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/62 (24%), Positives = 25/62 (40%)
 Frame = +1

Query: 133 LSGFNKYGLLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTK 312
           + GF K+ +L DDC  E     +   R    +  + ++ IV    L +    +   E   
Sbjct: 46  IGGFEKWPVLTDDCKIEVVKYLDLWSRCKLSICSKSDYEIVNKTALKLDCIDIQDNETWH 105

Query: 313 YE 318
           YE
Sbjct: 106 YE 107


>Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical
           protein Y37A1A.2 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 299 SLGRIVFCMESCMARTIRKFLSSTTW 222
           SL RI  C+ SC+   I  +L+ TTW
Sbjct: 403 SLTRIYQCVASCVILFISPYLTVTTW 428


>Z72506-5|CAA96616.2|  259|Caenorhabditis elegans Hypothetical
           protein F07A5.4 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 253 VRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKEY*MRH 411
           +  +Q++  K  L      K ++DS    PI  QV K+ + +   E  + ++H
Sbjct: 30  INELQINRHKRELNSNRLPKTDDDSTIFMPIYAQVSKKHIRKVCMEHFHSLKH 82


>AF039034-1|AAB94161.2|  423|Caenorhabditis elegans Hypothetical
           protein H22D07.1 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 349 EQVEKERLEREQWEKEY*MRHGIVVLF 429
           EQ+++E    E+WEK Y + H + V +
Sbjct: 215 EQIDEEAASMERWEKMYAINHFLFVFW 241


>AC024791-3|AAF60673.1|  468|Caenorhabditis elegans Hypothetical
           protein Y47G6A.13 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +1

Query: 160 LRDDCLHETPDVTEALRRLP--SHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLY 333
           L +D   E   + E LR L        E+ + ++ A    ++   L   EW   E+D + 
Sbjct: 256 LFEDLPDELKSIFEYLRTLSYADRPNYEKIYNLLMAAITRLKINFLDPYEW---EDDEME 312

Query: 334 LTPIVEQVEKERLEREQWEKE 396
                E+ EKE+ E+E+ EKE
Sbjct: 313 RMAKAEKEEKEKEEKEKKEKE 333


>Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical
           protein F11C1.5c protein.
          Length = 787

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 304 WTKYEEDSLYLTPIVEQVEKERLEREQWEK 393
           W K +  S  L  +++Q+E ++ ERE W K
Sbjct: 526 WNKVQAPSRKLASVIDQLEAKKKERE-WTK 554


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,395,820
Number of Sequences: 27780
Number of extensions: 183034
Number of successful extensions: 836
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)