Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0305
(469 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32470.1 68417.m04622 ubiquinol-cytochrome C reductase comple... 56 1e-08
At5g25450.1 68418.m03023 ubiquinol-cytochrome C reductase comple... 54 4e-08
At4g32470.2 68417.m04623 ubiquinol-cytochrome C reductase comple... 49 2e-06
At1g13420.1 68414.m01566 sulfotransferase family protein similar... 31 0.39
At5g28150.1 68418.m03402 expressed protein 30 0.68
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 29 1.6
At4g17220.1 68417.m02590 expressed protein 29 2.1
At2g22720.3 68415.m02692 expressed protein 28 2.7
At2g22720.2 68415.m02691 expressed protein 28 2.7
At2g22720.1 68415.m02693 expressed protein 28 2.7
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 28 3.6
At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi... 28 3.6
At3g60370.1 68416.m06752 immunophilin / FKBP-type peptidyl-proly... 27 4.8
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 27 4.8
At1g21600.1 68414.m02700 expressed protein similar to hypothetic... 27 4.8
At4g30020.1 68417.m04272 subtilase family protein contains simil... 27 6.3
At2g12900.1 68415.m01408 hypothetical protein similar to transcr... 27 6.3
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a... 27 8.4
>At4g32470.1 68417.m04622 ubiquinol-cytochrome C reductase complex
14 kDa protein, putative similar to SP|P48502
Ubiquinol-cytochrome C reductase complex 14 kDa protein
(EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam
profile PF02271: Ubiquinol-cytochrome C reductase
complex 14kD subunit
Length = 122
Score = 56.0 bits (129), Expect = 1e-08
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 148 KYGLLRDDCLHE--TPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEE 321
+YGL DD + + D+ EA+ RLP VVD RN R+ RA+ LSM+ LPK+
Sbjct: 30 RYGLRYDDLYDQYYSMDIKEAMNRLPREVVDARNQRLKRAMDLSMKHEYLPKDLQAVQTP 89
Query: 322 DSLYLTPIVEQVEKERLERE 381
YL ++ VE+E ERE
Sbjct: 90 FRGYLQDMLALVERESKERE 109
>At5g25450.1 68418.m03023 ubiquinol-cytochrome C reductase complex
14 kDa protein, putative similar to SP|P48502
Ubiquinol-cytochrome C reductase complex 14 kDa protein
(EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam
profile PF02271: Ubiquinol-cytochrome C reductase
complex 14kD subunit
Length = 122
Score = 54.4 bits (125), Expect = 4e-08
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Frame = +1
Query: 148 KYGLLRDDC---LHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYE 318
+YGL DD L++ D+ EAL RLP +VD RN R++RA+ LSM+ LP
Sbjct: 30 RYGLRYDDLYDPLYDL-DIKEALNRLPREIVDARNQRLMRAMDLSMKHEYLPDNLQAVQT 88
Query: 319 EDSLYLTPIVEQVEKERLERE 381
YL ++ V++ER ERE
Sbjct: 89 PFRSYLQDMLALVKRERAERE 109
>At4g32470.2 68417.m04623 ubiquinol-cytochrome C reductase complex
14 kDa protein, putative similar to SP|P48502
Ubiquinol-cytochrome C reductase complex 14 kDa protein
(EC 1.10.2.2) (CR14) {Solanum tuberosum}; contains Pfam
profile PF02271: Ubiquinol-cytochrome C reductase
complex 14kD subunit
Length = 101
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 148 KYGLLRDDCLHE--TPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKE 300
+YGL DD + + D+ EA+ RLP VVD RN R+ RA+ LSM+ LPK+
Sbjct: 30 RYGLRYDDLYDQYYSMDIKEAMNRLPREVVDARNQRLKRAMDLSMKHEYLPKD 82
>At1g13420.1 68414.m01566 sulfotransferase family protein similar to
steroid sulfotransferase 1 GI:3420004 from (Brassica
napus); contains Pfam profile PF00685: Sulfotransferase
domain
Length = 331
Score = 31.1 bits (67), Expect = 0.39
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 200 KHSADFHPMLLTRETSVLYVPYSSPCKKQSYLKKSGQNMKKIPYT*PQLLS 352
KH++D HP LLT L VPY + YLK S ++ K+P + P+L S
Sbjct: 98 KHTSDNHP-LLTHNPHEL-VPY---LELDLYLKSSKPDLTKLPSSSPRLFS 143
>At5g28150.1 68418.m03402 expressed protein
Length = 289
Score = 30.3 bits (65), Expect = 0.68
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -3
Query: 341 GVKYRESSSYFVHSSLGR-IVFCMESCMARTIRKFLSSTTWDGSLRSASVTSGV--SCKQ 171
GV+ +SSS + +V C+ C R R L + TW +L SVT GV SC Q
Sbjct: 12 GVQVADSSSSSNSGKNAQNLVTCIYQCRIRG-RNCLITVTWTKNLMGQSVTVGVDDSCNQ 70
Query: 170 S 168
S
Sbjct: 71 S 71
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 247 RIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEK 393
RI ++ + QK +PK++ + ED L PI+++ KE E E E+
Sbjct: 466 RIFECVKENGQKGFVPKQDSKREPEDDLETKPILKK-HKENSEEENKEQ 513
>At4g17220.1 68417.m02590 expressed protein
Length = 513
Score = 28.7 bits (61), Expect = 2.1
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +1
Query: 163 RDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTP 342
++D L EALRR+ +H D+ + + I + + K E + +ED L
Sbjct: 82 KEDALAAQDAAEEALRRVYTHQQDDDSLPLESIIAPLESQIKIHKHEISALQEDKKALER 141
Query: 343 IVEQVEKERLEREQ 384
+ + E LE E+
Sbjct: 142 LTKSKESALLEAER 155
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = +1
Query: 274 MQKTILPKEEWTKYEEDSLYLTPIVEQVEKE-----RLEREQWEKE 396
M + +LP + +++Y++D + + E ++KE R+ RE+ E+E
Sbjct: 503 MLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREEDERE 548
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = +1
Query: 274 MQKTILPKEEWTKYEEDSLYLTPIVEQVEKE-----RLEREQWEKE 396
M + +LP + +++Y++D + + E ++KE R+ RE+ E+E
Sbjct: 606 MLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREEDERE 651
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = +1
Query: 274 MQKTILPKEEWTKYEEDSLYLTPIVEQVEKE-----RLEREQWEKE 396
M + +LP + +++Y++D + + E ++KE R+ RE+ E+E
Sbjct: 274 MLRQLLPPKRFSRYDDDDINMEAGFEDIQKEERRSARIAREEDERE 319
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 235 ERNFRIVRAIQLSMQKTILPKEEWTKYEEDSLYLTPIVEQVEKERLEREQWEKEY 399
ER RI + L +K E+W L I E++++ LE +Q E+EY
Sbjct: 515 ERLNRIETELVLLKEKQAELTEQWEHERSVMSRLQSIKEEIDRVNLEIQQAEREY 569
>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 895
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 121 WAYNLSGFNKYGLLRD 168
WA +SGFN+YG LR+
Sbjct: 519 WASMISGFNEYGYLRE 534
>At3g60370.1 68416.m06752 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein SP:Q9M222; similar to
FKBP-type peptidyl-prolyl cis-trans isomerase fkpA
precursor (PPiase) (Rotamase)(SP:Q8X880) [Escherichia
coli O157:H7] ; contains Pfam PF00254: peptidyl-prolyl
cis-trans isomerase, FKBP-type
Length = 242
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 245 SVLYVPYSSPCKKQSYLKKSGQNMKKIPYT*PQLLSKLRKRGWRESS 385
S++YV +SPC L S + K PY +LL + KR RE++
Sbjct: 47 SLVYVLVASPCLLLPALSSSAKTKSKSPYDERRLLEQ-NKRIQRENN 92
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 27.5 bits (58), Expect = 4.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 166 DDCLHETPDVTEALRR-LPSHVVDERNFRIVRAIQLSMQKTILPKEEWTKY 315
DD +H E RR +PS ++ +IVRAI+ K P+EE Y
Sbjct: 242 DDAIHPLSSAPEPKRRFIPSKWEAKKVVKIVRAIRKGWIKFDKPEEEPNVY 292
>At1g21600.1 68414.m02700 expressed protein similar to hypothetical
protein GB:AAD41412 GI:5263310 from [Arabidopsis
thaliana]
Length = 328
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 241 NFRIVRAIQLSMQKTILPKEEWTKYEED 324
+F+I+ + T++ +EEWTK ED
Sbjct: 284 SFKIIHVGERDDPTTVIEREEWTKTRED 311
>At4g30020.1 68417.m04272 subtilase family protein contains
similarity to meiotic serine proteinase TMP GI:6468325
from [Lycopersicon esculentum]
Length = 816
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 157 LLRDDCLHETPDVTEALRRLPSHVVDERNFRIVRAIQLSMQKTILPKEEW 306
L+ H +PD E LRR P +R++++ + + Q LP + W
Sbjct: 92 LINGFAAHVSPDQAEMLRRAPGVKSVDRDWKVRKLTTHTPQFLGLPTDVW 141
>At2g12900.1 68415.m01408 hypothetical protein similar to
transcription factor(bZIP family) VSF-1 GI:3425907 from
[Lycopersicon esculentum]
Length = 264
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 247 GSFSRQQHGMEVCGVLQLHQEFHASN 170
GS Q+ ME C VLQ +EF SN
Sbjct: 217 GSVELQRLKMETCEVLQYRREFDRSN 242
>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from[Nicotiana tabacum]
Length = 1050
Score = 26.6 bits (56), Expect = 8.4
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 217 EVCGVLQLHQEFHASNHP 164
E+C +L+ HQ+FH ++ P
Sbjct: 31 EICEILRNHQKFHIASEP 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,926,062
Number of Sequences: 28952
Number of extensions: 172835
Number of successful extensions: 586
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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