Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0304
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    40   4e-04
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   4.4  

>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 27/151 (17%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
 Frame = +2

Query: 155 AIVLHALISIYLFLALAVVCDKYFVPAVEKICHALNMTNDVXXXXXXXXXXXXPELFVNV 334
           +I + A++++++ L     C  Y V +++++   +N++                E    +
Sbjct: 265 SIAMLAIVTVFVSL-----CADYLVGSIDQLVEEVNISKTFVGLVILPVVGNAAEHVTAI 319

Query: 335 IGTFITEGDIGVGTIVGSAVFNILAVAACCGIGAGMVV--PLDWWPLTRDCLAYGITVSI 508
           + ++  + D+ +G  +GS++   L +A    I  G ++  PL  +  + + +   ++V +
Sbjct: 320 VVSYRGQMDLALGVAIGSSIQIALFLAPFLVI-VGWIISQPLTLYFESLETVILFVSVFL 378

Query: 509 LICIIHDEYVQWYEAFLLVSLYGVYICIMYY 601
           +  +I D    W E   L++LY + +   +Y
Sbjct: 379 VNYLIQDGATHWLEGVQLLALYAIVVLAFFY 409


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 41   PLQNMNTSERDGYIRNCTPPAIDDFPAGLFTEL 139
            P    + S +DG ++  TP   D+FP   F E+
Sbjct: 926  PPSRRDRSAQDGVVQQATPHIQDEFPPIQFNEI 958


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,441
Number of Sequences: 5004
Number of extensions: 59238
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)