Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0304
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0564 - 4176177-4178096 44 1e-04
01_01_0251 + 2058443-2058565,2058870-2059087,2060436-2060498,206... 33 0.21
11_06_0626 - 25620409-25620706,25620814-25620943,25621034-256212... 32 0.49
02_05_0116 - 25976234-25976394,25976485-25976701,25977345-259774... 32 0.49
01_03_0038 + 11862743-11862884,11863145-11863704,11863733-118637... 30 1.5
07_01_0037 + 301864-302349 30 2.0
01_06_0958 - 33357689-33357997,33358135-33358284,33358371-333585... 30 2.0
07_03_1073 - 23760802-23761437,23761963-23762132,23762234-237624... 29 4.5
06_01_0149 + 1124427-1126805 29 4.5
>03_01_0564 - 4176177-4178096
Length = 639
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 2/149 (1%)
Frame = +2
Query: 188 LFLALAVVCDKYFVPAVEKICHALNMTNDVXXXXXXXXXXXXPELFVNVIGTFIT-EGDI 364
LF L YF ++EK+ L + V P++F ++ T GD+
Sbjct: 141 LFYMLGNTAADYFCCSLEKMSALLRLPPTVAGVTLLPFGNGAPDVFASIAAFMGTGAGDV 200
Query: 365 GVGTIVGSAVF-NILAVAACCGIGAGMVVPLDWWPLTRDCLAYGITVSILICIIHDEYVQ 541
G+ +++G AVF + V A A V +D RD + +T+ L I+ V
Sbjct: 201 GLNSVLGGAVFVTCVVVGAVSLCVAEKNVQIDRRCFVRDVGFFLMTLVALSIILIVGKVT 260
Query: 542 WYEAFLLVSLYGVYICIMYYDKPIQNFAK 628
+ A + VS+Y VY ++ ++ ++ A+
Sbjct: 261 VWGAIMFVSIYVVYAFVVAANEVLRKHAR 289
>01_01_0251 +
2058443-2058565,2058870-2059087,2060436-2060498,
2060499-2060590,2060697-2060938
Length = 245
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 455 DWWPLTRDCLAYGITVSILICIIHDEYVQWYEAFL-LVSLYGVYICIMYYDKPIQNFAK 628
D W R+ AYGI V I++ D VQ+Y +L + LYG Y+ + N++K
Sbjct: 63 DLWDGFRESSAYGIAVPIVLNGCSDGVVQYYVPYLSAIQLYGRLRRHFYHSRVQTNWSK 121
>11_06_0626 -
25620409-25620706,25620814-25620943,25621034-25621250,
25621894-25622015,25622119-25622267,25622642-25622759,
25622840-25623185
Length = 459
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 347 ITEGDIGVGTIVGSAVFNILAVAACC 424
+T G +G GT+VGSA F++ + A C
Sbjct: 112 LTAGGLGPGTLVGSAAFDLFPIHAVC 137
>02_05_0116 -
25976234-25976394,25976485-25976701,25977345-25977466,
25977570-25977718,25978095-25978212,25978293-25978638
Length = 370
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 347 ITEGDIGVGTIVGSAVFNILAVAACC 424
+T G +G GT+VGSA F++ + A C
Sbjct: 112 LTAGGLGPGTLVGSAAFDLFPIHAVC 137
>01_03_0038 +
11862743-11862884,11863145-11863704,11863733-11863777,
11864174-11864563
Length = 378
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 3 RRPRLPASRSIQRHFKI*TPPNEMAISGTAL 95
RR R P+ R QRH PP+E A+ G L
Sbjct: 26 RRSRRPSRRKSQRHLTTVKPPSETALRGHGL 56
>07_01_0037 + 301864-302349
Length = 161
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 352 GG*YRSGDHSGFGCLQYISCGGLLWYWCGNGCSFGLVASY*RLSG 486
GG R G G G S GG YWCG G G+VA+ + G
Sbjct: 62 GGGCRGGGGCGMGMGMAASGGGKEGYWCGGG---GVVAAVDGMEG 103
>01_06_0958 -
33357689-33357997,33358135-33358284,33358371-33358511,
33359807-33360592
Length = 461
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 377 IVGSAVFNILAVAACCGIG--AGMVVPLDWWPLTRDCLAYGITVSILICIIHDEYV 538
+ G A N+L C G G A V+ D L + CL G+++ ++ ++ E++
Sbjct: 112 VTGGAASNVLYNLLCTGCGRRAAAVIDYDIALLFQPCLLLGVSIGVVCNVMFPEWL 167
>07_03_1073 -
23760802-23761437,23761963-23762132,23762234-23762446,
23762531-23762819
Length = 435
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 118 REVIDSRRSAVPDIAISFGGVHILKWRCMER 26
RE +D R+A+PD A+++ V+ K+R + +
Sbjct: 280 RETVDRLRAALPDAALTYVDVYSAKYRLISQ 310
>06_01_0149 + 1124427-1126805
Length = 792
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Frame = +2
Query: 314 PELFVNVIGTFITEGDIGVGTIVGSAVFNILAVAACCGIGAGMVVPLDWWPLTRDCLAYG 493
P +F + T + G+ G+ ++ + +L ++ +G G + W + R A+
Sbjct: 372 PVVFALCLMTIVLCGNGGIPYVINA----MLTDSSFLSVGVGTMAKCLWSAVARSSRAFY 427
Query: 494 ITVSILICIIHDEYVQWYEA-----FLLVSLYGVYICIMYYDK 607
+ + IC I V + EA FL+ + V + YY K
Sbjct: 428 TFIDVFICYILFIAVAYEEATETLVFLISDWFAVSLLHAYYGK 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,311,148
Number of Sequences: 37544
Number of extensions: 409264
Number of successful extensions: 1156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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