Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0304
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32) 186 2e-47
SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.) 159 3e-39
SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36) 126 1e-29
SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0) 117 8e-27
SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_8443| Best HMM Match : Calx-beta (HMM E-Value=0) 36 0.023
SB_44420| Best HMM Match : Calx-beta (HMM E-Value=2e-22) 35 0.053
SB_15333| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_39054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 29 4.6
SB_55883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 28 6.0
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25) 28 6.0
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_3709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_37557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_24460| Best HMM Match : DUF1393 (HMM E-Value=2.9) 28 8.0
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 8.0
>SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32)
Length = 228
Score = 186 bits (452), Expect = 2e-47
Identities = 84/175 (48%), Positives = 116/175 (66%), Gaps = 1/175 (0%)
Frame = +2
Query: 131 TELQRQ-HGAIVLHALISIYLFLALAVVCDKYFVPAVEKICHALNMTNDVXXXXXXXXXX 307
T+ QRQ G IV H ++IY F ALA VCD+YFV ++E+IC LN+ +DV
Sbjct: 2 TQYQRQKQGGIVFHVFVAIYTFAALATVCDEYFVSSLERICDGLNLKSDVAGATFMAAGS 61
Query: 308 XXPELFVNVIGTFITEGDIGVGTIVGSAVFNILAVAACCGIGAGMVVPLDWWPLTRDCLA 487
PE F +VIG FIT+GDIG+GTIVGSAVFNIL + A CG+ AG V+ L WWPLTRD
Sbjct: 62 SAPEFFTSVIGVFITKGDIGIGTIVGSAVFNILFIVAICGMFAGSVLTLSWWPLTRDSFC 121
Query: 488 YGITVSILICIIHDEYVQWYEAFLLVSLYGVYICIMYYDKPIQNFAKGSWEMGIK 652
Y ++V+ L+ I +D+ V WYE LV +Y +Y+ IMY++ ++ F + +G++
Sbjct: 122 YMLSVAALVIITYDKEVHWYEGMALVLMYLLYVTIMYFNSTLEGFFHWCFNVGVE 176
>SB_42413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 159 bits (385), Expect = 3e-39
Identities = 68/172 (39%), Positives = 108/172 (62%)
Frame = +2
Query: 125 LFTELQRQHGAIVLHALISIYLFLALAVVCDKYFVPAVEKICHALNMTNDVXXXXXXXXX 304
+FT +R+HGA+++H I +Y F+ALA++CD YF ++EK+C L + DV
Sbjct: 39 IFTLQERRHGAVIIHTFICLYCFVALAILCDNYFCASLEKLCKRLRIPTDVAGATFMAAG 98
Query: 305 XXXPELFVNVIGTFITEGDIGVGTIVGSAVFNILAVAACCGIGAGMVVPLDWWPLTRDCL 484
P LF+ + F+ EGDIG+GTI+GS++FNIL + A CG+ +GMV+ L WP+ RD
Sbjct: 99 SSMPTLFIAIASVFMGEGDIGLGTIIGSSMFNILFITAICGLFSGMVISLHTWPIVRDSC 158
Query: 485 AYGITVSILICIIHDEYVQWYEAFLLVSLYGVYICIMYYDKPIQNFAKGSWE 640
Y + + L+ +IHD + +YEA + LY YI IM ++ ++N + ++E
Sbjct: 159 VYVVNLVGLLIVIHDNVIHFYEALIFPVLYTGYILIMVFNTRLENAFESAFE 210
>SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)
Length = 183
Score = 126 bits (305), Expect = 1e-29
Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Frame = +2
Query: 185 YLFLALAVVCDKYFVPAVEKICHALNMTNDVXXXXXXXXXXXXPELFVNVIGTFIT-EGD 361
Y+FLALA+ CD++FVP++ I L + DV PELF + IGTFI + +
Sbjct: 3 YMFLALAIACDEFFVPSLTVIIEKLELKEDVAGATFMAAGGSAPELFTSFIGTFIDPKSN 62
Query: 362 IGVGTIVGSAVFNILAVAACCGIGAGMVVPLDWWPLTRDCLAYGITVSILIC-IIHDEYV 538
+G+GTIVGSAVFN+L V C + + V+ L WWPL RDC+ Y + + ILI + + +
Sbjct: 63 VGIGTIVGSAVFNVLFVIGMCAMFSKGVLELTWWPLFRDCIFYSLALIILIIFFLSGDVI 122
Query: 539 QWYEAFLLVSLYGVYICIMYYDKPIQNFAKG 631
W+E+ +L+ Y Y+ M Y+ ++ KG
Sbjct: 123 VWWESLVLLLCYFAYVIFMKYNHNVERRIKG 153
>SB_45810| Best HMM Match : Na_Ca_ex (HMM E-Value=0)
Length = 582
Score = 117 bits (282), Expect = 8e-27
Identities = 56/142 (39%), Positives = 86/142 (60%)
Frame = +2
Query: 194 LALAVVCDKYFVPAVEKICHALNMTNDVXXXXXXXXXXXXPELFVNVIGTFITEGDIGVG 373
LALA+VCD +FVP++E I L+++ DV PELF ++ G + + D+GVG
Sbjct: 29 LALAIVCDDFFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSIAGVTV-DSDVGVG 87
Query: 374 TIVGSAVFNILAVAACCGIGAGMVVPLDWWPLTRDCLAYGITVSILICIIHDEYVQWYEA 553
TIVGSA+FN+L + A +G V+ LDW PL RD +AY ++++ I D + YEA
Sbjct: 88 TIVGSAIFNLLVIIALTAAFSGQVLQLDWRPLLRDSVAYSLSIAFFIIFSWDGKFEMYEA 147
Query: 554 FLLVSLYGVYICIMYYDKPIQN 619
+L+ LY YI +M ++ + +
Sbjct: 148 AVLLILYIAYIVVMKFNPKLMD 169
>SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +2
Query: 461 WPLTRDCLAYGITVSILICIIHDEYVQWYEAFLLVSLYGVYICIMYYDKPIQNFAK 628
W + RD Y +V +L+ I+D V WYE + V +Y +YI IMY++ ++ K
Sbjct: 57 WKM-RDSTVYVASVIVLMVSIYDNKVYWYEGLIFVIVYAIYIVIMYFNDQVEGLCK 111
>SB_8443| Best HMM Match : Calx-beta (HMM E-Value=0)
Length = 694
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 326 VNVIGTFITEGDIGVGTIVGSAVFNILAVAACC 424
+ +IG GD+G TIVGSA FN+ + C
Sbjct: 86 IEIIGNNFKAGDLGPSTIVGSAAFNLFVIIGVC 118
>SB_44420| Best HMM Match : Calx-beta (HMM E-Value=2e-22)
Length = 461
Score = 35.1 bits (77), Expect = 0.053
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Frame = +2
Query: 314 PELFVNVIGTFITEG----DIGVGTIVGSAVFNILAVAACCGIG-----AGMVVPLDWWP 466
PE+ +++I I G +G TIVGSA FN+L + C + + ++ +
Sbjct: 111 PEILLSIIEITIMNGFEAGALGPSTIVGSAAFNLLCITGVCVMAVPKFETRRIKSMNVFA 170
Query: 467 LT--RDCLAYGITVSILICIIHDEYVQWYEAFLLVSLYGVYICIMY 598
+T LAY I + I++ + + V+ +EA L + + + I Y
Sbjct: 171 VTAITSLLAY-IWLFIILSVNTKDVVELWEAILTFLFFPILVIIAY 215
>SB_15333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 341 TFITEGDIGVGTIVGSAVFNILAVAACC 424
T T+G +G TIVGSA FN+L + A C
Sbjct: 126 TTATDG-LGTFTIVGSASFNLLLITAVC 152
>SB_39054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 803
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 188 LFLALAVVCDKYFVPAVEKICHALNM 265
LF L ++ DKY +P EKIC L++
Sbjct: 265 LFKGLGLIKDKYKIPLKEKICAYLHL 290
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 403 YIEDSRTHYGPHSDITLRNEGTYD 332
+++ +RT +GPH+D T GT+D
Sbjct: 176 HMDPTRTSHGPHTDPTRNPHGTHD 199
>SB_55883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 362 IGVGTIVGSAVFNILAVAACCGIGAGMV 445
IG+G ++G+ + + + G+GAG+V
Sbjct: 287 IGIGVLIGAPLAGVAGLVGVVGVGAGVV 314
>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 431
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = -3
Query: 367 SDITLRNEGTYDVHE*FWCRSSCGHESRSSHIVCHVKRMTNFFNSRYKVFVANNCKS*KK 188
SD R+ T+ + F CR + SRS H+ H++ T K F C +
Sbjct: 317 SDELTRHMRTHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-----EKPFACETCGR-RF 370
Query: 187 IDGDERVQYDSSVLSLQLREESSRE 113
DER ++ + + LRE++ +E
Sbjct: 371 ARSDERRRH----MKIHLREQAKKE 391
>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
Length = 669
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = -3
Query: 367 SDITLRNEGTYDVHE*FWCRSSCGHESRSSHIVCHVKRMTNFFNSRYKVFVANNCKS*KK 188
SD R+ T+ + F CR + SRS H+ H++ T K F C +
Sbjct: 555 SDELTRHMRTHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG-----EKPFACETCGR-RF 608
Query: 187 IDGDERVQYDSSVLSLQLREESSRE 113
DER ++ + + LRE++ +E
Sbjct: 609 ARSDERRRH----MKIHLREQAKKE 629
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 235 C*KNLSCA*HDKR-CGWSDFHGRSYFCTR 318
C L C D + CGWS+ HG ++ TR
Sbjct: 1882 CPPQLECTFEDTQLCGWSNVHGDNFDWTR 1910
>SB_3709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 174 SACSTIAPCCRCSSVKSPAGKS 109
S + PCCRC S ++ +G+S
Sbjct: 2 STARSTTPCCRCLSTRTTSGRS 23
>SB_37557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 22 RRAPYNATSKYEHLRTRWLYPELHS 96
R+ N T ++ HL+ +W +P LHS
Sbjct: 457 RKKTMNPTIEFLHLKGQWGFPSLHS 481
>SB_24460| Best HMM Match : DUF1393 (HMM E-Value=2.9)
Length = 152
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 365 GVGTIVGSAVFNILAVAACCGIGAGMV 445
G+G ++G + I + G+GAGMV
Sbjct: 57 GIGVLIGGPLAGIAGMIGVVGVGAGMV 83
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +2
Query: 458 WWPLTRDCLAYGITVSILICIIHDEYVQWYEAFLLVSLYGVYICIMYYDKPIQNFAKGSW 637
W TRD + G+ + C++ V W A ++ + GV++ ++ Y++P+ K W
Sbjct: 746 WAGATRDA-STGLVRLVSDCLV----VSWVIALIVSVIGGVFLLLVVYEEPLMT-GKAMW 799
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,815,477
Number of Sequences: 59808
Number of extensions: 463018
Number of successful extensions: 1223
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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