Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0304
         (678 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    26   1.3  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   2.9  
X87411-1|CAA60858.1|  599|Anopheles gambiae maltase-like protein...    24   5.1  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   5.1  
AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.            23   6.7  
AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical prote...    23   6.7  
AJ439061-1|CAD27770.1|   89|Anopheles gambiae hypothetical prote...    23   6.7  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   8.9  
AY752910-1|AAV30084.1|  250|Anopheles gambiae peroxidase 15 prot...    23   8.9  

>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 329 NVIGTFITEGDIGVGTIVGSAVFNILAVAACCGIGAGM 442
           + +  F+T GD+ +    G  VF  L + A   + AGM
Sbjct: 359 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGM 396


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
            topoisomerase protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 60   PPNEMAISGTALRLLSMTSLLDSSRSCNDSTELSYCTRSSP 182
            P  ++ ISG A    S ++L+ +    ND   L Y   +SP
Sbjct: 880  PSPDVVISGLASNNSSSSNLVAAGMVINDENNLHYHRSASP 920


>X87411-1|CAA60858.1|  599|Anopheles gambiae maltase-like protein
           Agm2 protein.
          Length = 599

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 467 EATSPKEQPFPHQYHNKPPQLIY*RQP 387
           E    ++Q + HQ+H K P L Y R P
Sbjct: 170 EWNDERKQFYLHQFHKKQPDLNY-RNP 195


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 627  KGAGKWVSNMFKDNED 674
            + +G W+ N+FKD E+
Sbjct: 3219 RNSGNWLDNIFKDIEE 3234


>AY578807-1|AAT07312.1|  438|Anopheles gambiae punt protein.
          Length = 438

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
 Frame = -2

Query: 605 CHNTLC----KCKPRTMKLEEMLHTTEH 534
           C  ++C    K  P   K  EM+HT +H
Sbjct: 36  CRGSMCNREHKWIPEATKAPEMMHTVDH 63


>AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 331 VHE*FWCRSSCGHESRSSHIVCHVKRMT 248
           +HE  + R    H   S H +CH K  T
Sbjct: 28  LHESGFVRRQGSHAKSSVHKLCHAKNTT 55


>AJ439061-1|CAD27770.1|   89|Anopheles gambiae hypothetical protein
           protein.
          Length = 89

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 331 VHE*FWCRSSCGHESRSSHIVCHVKRMT 248
           +HE  + R    H   S H +CH K  T
Sbjct: 28  LHESGFVRRQGSHAKSSVHKLCHAKNTT 55


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 339 VPSLRRVISEWGP 377
           VPS+R   SEW P
Sbjct: 504 VPSIRSAASEWNP 516


>AY752910-1|AAV30084.1|  250|Anopheles gambiae peroxidase 15
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 71  DGYIRNCTPPAIDDFPAGLF 130
           DGY  N  P  ID F +  F
Sbjct: 118 DGYDENINPAIIDSFASAAF 137


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,664
Number of Sequences: 2352
Number of extensions: 15016
Number of successful extensions: 37
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)