Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0304
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     26   0.29 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.5  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   8.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 329 NVIGTFITEGDIGVGTIVGSAVFNILAVAACCGIGAGM 442
           + +  F+T GD+ +    G  VF+ L + A   + AGM
Sbjct: 376 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGM 413


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 536 VQWYEAFLLVSLYGVYICIMYYDKPIQNFAK 628
           + W   FL V L+GV + +   D  +   +K
Sbjct: 1   MSWQRVFLAVGLFGVLLLLTNADNSVHILSK 31


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 289 SRSSHIVCHVKRMTNFFNSRYKVFVANNCK 200
           SR   I+  +   T   N+ YK    NNCK
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNCK 105


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 25  RAPYNATSKYEHLRTRWL 78
           R P N TS+Y  L   WL
Sbjct: 98  RLPENMTSEYRLLEVDWL 115


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 292 ESRSSHIVCHVKRMTNFFNSRYKVFVANNCK 200
           +S+   I+  +    N+ N+ YK    NN K
Sbjct: 75  KSKEHKIISSLSNNYNYNNNNYKKLYCNNYK 105


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 292 ESRSSHIVCHVKRMTNFFNSRYKVFVANNCK 200
           +S+   I+  +    N+ N+ YK    NN K
Sbjct: 75  KSKEHKIISSLSNNYNYNNNNYKKLYCNNYK 105


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 161 VLHALISIYLFLALAVVCDKYFVPAVEKICHA 256
           ++  L  IYLFL++ ++   +  P +   C A
Sbjct: 1   MISMLRCIYLFLSVILITSYFVTPVMPCNCKA 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,063
Number of Sequences: 438
Number of extensions: 4715
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)