Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0301
(562 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 23 2.4
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 23 2.4
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 23 2.4
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 23 2.4
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 23 2.4
AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax pr... 23 2.4
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 23 2.4
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 22 3.1
AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface pro... 22 4.1
AF321227-5|AAK16425.1| 292|Tribolium castaneum Zen2 protein. 21 7.2
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 22.6 bits (46), Expect = 2.4
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 418 QVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 537
QVAP + A GH L T+ Q +PQ + H Q P
Sbjct: 47 QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 22.6 bits (46), Expect = 2.4
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 418 QVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 537
QVAP + A GH L T+ Q +PQ + H Q P
Sbjct: 47 QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 22.6 bits (46), Expect = 2.4
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 418 QVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 537
QVAP + A GH L T+ Q +PQ + H Q P
Sbjct: 47 QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 22.6 bits (46), Expect = 2.4
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 418 QVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 537
QVAP + A GH L T+ Q +PQ + H Q P
Sbjct: 47 QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 22.6 bits (46), Expect = 2.4
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 418 QVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 537
QVAP + A GH L T+ Q +PQ + H Q P
Sbjct: 47 QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89
>AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax
protein.
Length = 157
Score = 22.6 bits (46), Expect = 2.4
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 418 QVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 537
QVAP + A GH L T+ Q +PQ + H Q P
Sbjct: 47 QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 22.6 bits (46), Expect = 2.4
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 418 QVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 537
QVAP + A GH L T+ Q +PQ + H Q P
Sbjct: 47 QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 22.2 bits (45), Expect = 3.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 418 QVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQ 516
QVAP + A GH L T+ Q +PQ
Sbjct: 47 QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79
>AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface
protein chaoptin protein.
Length = 782
Score = 21.8 bits (44), Expect = 4.1
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +2
Query: 50 SHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDIS 187
S P LS S +FN +P + A + +N ++ D+S
Sbjct: 458 SQVPALSTPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDLS 503
>AF321227-5|AAK16425.1| 292|Tribolium castaneum Zen2 protein.
Length = 292
Score = 21.0 bits (42), Expect = 7.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 455 DEETGIPFRGLFIIDDKQN 511
D ++ +PF GLFI + N
Sbjct: 15 DSDSKLPFSGLFIENQAGN 33
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,792
Number of Sequences: 336
Number of extensions: 2173
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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