Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0301
(562 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 216 9e-57
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 1e-30
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012) 93 1e-19
SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08) 29 2.6
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2) 29 2.6
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_41164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11) 28 6.0
SB_7258| Best HMM Match : rve (HMM E-Value=1.1e-14) 27 7.9
>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
Length = 265
Score = 216 bits (528), Expect = 9e-57
Identities = 101/157 (64%), Positives = 124/157 (78%), Gaps = 4/157 (2%)
Frame = +2
Query: 89 KVFSFNKMPLQMT---KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 256
++ SF++ + T KPAP F TAV +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39 RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98
Query: 257 TEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRIS 436
TEIIAFS++ DEF+ I CEV+ S DS ++HLAW N PRK+GG+G +NIP++SD + +IS
Sbjct: 99 TEIIAFSDRVDEFKAINCEVIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQIS 158
Query: 437 RDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVG 547
+DYGVL E+ G+ RGLFIIDDK LRQITINDLPVG
Sbjct: 159 KDYGVLLEDQGVALRGLFIIDDKGILRQITINDLPVG 195
>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 129 bits (312), Expect = 1e-30
Identities = 56/80 (70%), Positives = 69/80 (86%)
Frame = +2
Query: 119 QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 298
Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55 QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114
Query: 299 KIGCEVLGASTDSHFTHLAW 358
I EV+G S DS FTHLAW
Sbjct: 115 AINTEVVGCSVDSVFTHLAW 134
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +2
Query: 482 GLFIIDDKQNLRQITINDLPVG 547
GLFIIDDK LRQIT+NDLPVG
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVG 156
>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
Length = 704
Score = 93.1 bits (221), Expect = 1e-19
Identities = 42/62 (67%), Positives = 52/62 (83%)
Frame = +2
Query: 362 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 541
N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+ RGLFIIDDK LRQITINDLP
Sbjct: 3 NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62
Query: 542 VG 547
VG
Sbjct: 63 VG 64
>SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)
Length = 416
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +2
Query: 41 SKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK 208
S +S SPVLSV + V S + +Q T P F AT + G F D L+ GK
Sbjct: 204 SSSSRSPVLSVTDGIA-VQSSSTESVQPTLILPPFTATGLHTGSFYDDCLAVLSGK 258
>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
Length = 893
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = -1
Query: 541 GQVVDGDLPEVLLVVDD-EESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESAL 377
G++ D + L ++ + ++EG+A+ H+V R+ + + Y R + GT+S L
Sbjct: 336 GKLTDESMDSFLSELEKVDTTAEGEAQRYFDHAVTLRNTILFLRYNRTL-GTDSTL 390
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 517 PEVLLVVDDEESSEGDARLLVQHSVVARDAVRLVAYQRNVHGTESAL 377
P+VL+V D E +LL H V R + Y R + SAL
Sbjct: 464 PKVLMVDDGTEFKGATTKLLTDHGVEIRGFFTVADYDRGLVAMASAL 510
>SB_41164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 400 HSSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRPARGGGR 555
HSS K+ + RLRSA G+ +P+T Q P H + P+ G R
Sbjct: 38 HSSKKKGLVK-TKRLRSASVGEAQNMPKTT--AGQLRPSRRHLKAPSTGKER 86
>SB_7856| Best HMM Match : F5_F8_type_C (HMM E-Value=3.6e-11)
Length = 334
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 416 DKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI--TIND 535
D ++ Y V+D+ET I GL I +K+N +++ T ND
Sbjct: 275 DTIREVNCRYNVVDKETRIKVTGLLTIKEKKNGKELYRTRND 316
>SB_7258| Best HMM Match : rve (HMM E-Value=1.1e-14)
Length = 425
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 517 PEVLLVVDDEESSEGDARLLVQHSVVARDA 428
P+VL+V D E + +LL H VV R A
Sbjct: 242 PKVLMVDDCTEFKDATTKLLTDHGVVVRRA 271
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,647,571
Number of Sequences: 59808
Number of extensions: 309619
Number of successful extensions: 1042
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -