Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0301
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   236   7e-63
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   201   3e-52
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    56   2e-08
Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    28   4.0  
L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncog...    27   7.0  
AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isofor...    27   7.0  
AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.     27   7.0  
AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell...    27   7.0  
AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell...    27   7.0  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    27   9.2  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  236 bits (578), Expect = 7e-63
 Identities = 109/140 (77%), Positives = 122/140 (87%)
 Frame = +2

Query: 128 KPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 307
           KPAPQFK  AVV+GEF D+SLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I 
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAIN 67

Query: 308 CEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 487
             VL ASTDS F+HLAWIN PRK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGL
Sbjct: 68  TVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGL 127

Query: 488 FIIDDKQNLRQITINDLPVG 547
           FIID  QNLRQITINDLPVG
Sbjct: 128 FIIDPSQNLRQITINDLPVG 147


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  201 bits (490), Expect = 3e-52
 Identities = 88/145 (60%), Positives = 114/145 (78%)
 Frame = +2

Query: 113 PLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADE 292
           PL      P FK TAVV+G+FK IS  DYKGK++V+FFYPLDFTFVCPTEIIA+ ++A+E
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 293 FRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGI 472
           FR +G EV+  S DSHF+HLAW+NTPRK GGLG M+IPL++D + +I+  +GVLD+E+G+
Sbjct: 92  FRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGL 151

Query: 473 PFRGLFIIDDKQNLRQITINDLPVG 547
            +RGLF+ID    +R  T NDLPVG
Sbjct: 152 SYRGLFLIDPSGTVRHTTCNDLPVG 176


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
 Frame = +2

Query: 176 KDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHL 352
           K+ +L +Y G+ +++LF +P DFT VC TE+    + A EFRK   ++L  S DS  TH 
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRKRHVQILAISIDSSETHR 77

Query: 353 AW---INTPRKQGGLGP-MNIPLISDKSHRISRDYGVLDEE 463
            W   IN+  +    G  +   +I+D    I  + G++D +
Sbjct: 78  DWAKDINSVAQLSNCGSHLPFEIIADTDRSICTELGMIDPD 118


>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 559 STDLPHGQVVDGDLPEVLLVVDDEESSEGDARLLVQHS 446
           + D+  GQV  GDL   L+ V  +E S+ D  + ++HS
Sbjct: 325 AVDILSGQVQQGDLDLELVFVCPDEDSDDDGTVTIEHS 362


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 559 STDLPHGQVVDGDLPEVLLVVDDEESSEGDARLLVQHS 446
           + D+  GQV  GDL   L+ V  +E S+ D  + ++HS
Sbjct: 347 AVDILSGQVQQGDLDLELVFVCPDEDSDDDGTVTIEHS 384


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 559 STDLPHGQVVDGDLPEVLLVVDDEESSEGDARLLVQHS 446
           + D+  GQV  GDL   L+ V  +E S+ D  + ++HS
Sbjct: 349 AVDILSGQVQQGDLDLELVFVCPDEDSDDDGTVTIEHS 386


>Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical
           protein F26E4.12 protein.
          Length = 163

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 158 VVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 319
           V N    D+SLSDYKGK V++         +         E  D ++K G EVL
Sbjct: 9   VKNANGDDVSLSDYKGK-VLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVL 61


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 394 HEHSSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEP 513
           HE  S K++ +  L R      G GH +  T H R   +P
Sbjct: 625 HEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPTQP 664


>L15347-1|AAA28142.1|  813|Caenorhabditis elegans raf proto-oncogene
           protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 555 PTSPTGRSLMVICLRFCLSSMMKSPRKGMPVSSSSTP 445
           PTSP   S  +I L  C SS +    +  P++S STP
Sbjct: 15  PTSPHCPSPRLISLPRCASSSIDRKDQASPMASPSTP 51


>AY493413-1|AAR86712.1|  813|Caenorhabditis elegans LIN-45 isoform 2
           protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 555 PTSPTGRSLMVICLRFCLSSMMKSPRKGMPVSSSSTP 445
           PTSP   S  +I L  C SS +    +  P++S STP
Sbjct: 15  PTSPHCPSPRLISLPRCASSSIDRKDQASPMASPSTP 51


>AY455928-1|AAR26307.1|  813|Caenorhabditis elegans LIN-45 protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 555 PTSPTGRSLMVICLRFCLSSMMKSPRKGMPVSSSSTP 445
           PTSP   S  +I L  C SS +    +  P++S STP
Sbjct: 15  PTSPHCPSPRLISLPRCASSSIDRKDQASPMASPSTP 51


>AC024204-7|AAM97982.1|  614|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform b protein.
          Length = 614

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 555 PTSPTGRSLMVICLRFCLSSMMKSPRKGMPVSSSSTP 445
           PTSP   S  +I L  C SS +    +  P++S STP
Sbjct: 57  PTSPHCPSPRLISLPRCASSSIDRKDQASPMASPSTP 93


>AC024204-6|AAF36042.1|  813|Caenorhabditis elegans Abnormal cell
           lineage protein 45,isoform a protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 555 PTSPTGRSLMVICLRFCLSSMMKSPRKGMPVSSSSTP 445
           PTSP   S  +I L  C SS +    +  P++S STP
Sbjct: 15  PTSPHCPSPRLISLPRCASSSIDRKDQASPMASPSTP 51


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = -2

Query: 561 PPPTSPTGRSLMVICLRFCLSSMMKSPRKGMPVSSSSTP*SREMRCDLSLIRGMFMGPSP 382
           P  T+PT   +  +C   C+   + S       +++ TP           I+ +   P+P
Sbjct: 311 PQSTNPTPVEVRALCTPTCMPQCLPSCTATTTTTTTQTP----------YIQTLAPAPAP 360

Query: 381 PCLRGVLIQARCV-KCESVEAPSTSQPI 301
             ++  +IQ +CV  C     PS + P+
Sbjct: 361 APVQIQIIQKQCVPSCMPACQPSCTNPV 388


>AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
           protein Y56A3A.21 protein.
          Length = 159

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 74  FVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVV 217
           F +Y   F   +  LQ +      + TA VNG    +S+SD   K+ V
Sbjct: 35  FFHYKTTF-ITEFTLQCSNNPKNIQYTAEVNGRLIPVSISDETAKFQV 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,460,964
Number of Sequences: 27780
Number of extensions: 229758
Number of successful extensions: 863
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)