Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0301
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.52 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   3.7  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   3.7  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   3.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   3.7  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   4.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 415 RQVAPHLSRLRSAGRGD-GHPLPRTLHHRRQAEPQADHHQRP 537
           R++     RL  +  GD   P  + LHH +   PQA    +P
Sbjct: 789 RRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQP 830


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 275 SEKADEFRKIGCEVLGASTDSHFTHL 352
           +E+ +E+R + CE +  S +S  TH+
Sbjct: 30  AERQEEYRCVICERVYCSRNSLMTHI 55


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 152  TAVVNGEFKDISLSDY 199
            T +++  FKD+ LSD+
Sbjct: 1401 TPIMDAHFKDVKLSDF 1416


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +1

Query: 427 PHLSRLRSAGRGDGHPL----PRTLHHRRQAEPQAD 522
           P L R   A  G+  P+    PR  H R + EP+A+
Sbjct: 114 PRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAE 149



 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 472 PLPRTLHHRRQAEPQAD 522
           P PR  H R + EP+A+
Sbjct: 107 PQPRPPHPRLRREPEAE 123


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 212 VVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 319
           V +   P++  F  P E     E+AD  R++ C++L
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLL 49


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 212 VVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVL 319
           V +   P++  F  P E     E+AD  R++ C++L
Sbjct: 15  VAIMAAPVEDEFE-PLEHFENEERADRHRRVTCDLL 49


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -3

Query: 473 GC-PSPRPALRSRERCGATCRLSEECSW 393
           GC P P P+   R RC +  ++S    W
Sbjct: 42  GCVPKPIPSYACRGRCSSYLQVSGSKIW 69


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 254 PTEIIAFSEKADEFRKIGCEVL 319
           P E     E+AD  R++ C++L
Sbjct: 3   PLEHFENEERADRHRRVTCDLL 24


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 156 AVALNWGAGLVICR 115
           A+ ++W AG V+CR
Sbjct: 99  AITVSWKAGDVMCR 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,329
Number of Sequences: 438
Number of extensions: 2567
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)