Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0301
(562 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)... 171 2e-43
At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat... 169 8e-43
At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to pe... 72 3e-13
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 62 3e-10
At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol spe... 34 0.057
At1g80910.1 68414.m09493 expressed protein 34 0.075
At1g16020.2 68414.m01922 expressed protein 32 0.30
At1g16020.1 68414.m01921 expressed protein 32 0.30
At1g57560.1 68414.m06531 myb family transcription factor (MYB50)... 31 0.53
At5g57370.1 68418.m07168 expressed protein low similarity to nuc... 31 0.70
At5g26660.1 68418.m03174 myb family transcription factor (MYB4) ... 30 1.2
At1g09540.1 68414.m01070 myb family transcription factor (MYB61)... 30 1.2
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 29 1.6
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (... 28 3.7
At3g62170.1 68416.m06985 pectinesterase family protein contains ... 28 3.7
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ... 28 3.7
At4g16146.1 68417.m02449 expressed protein 28 4.9
At2g32410.1 68415.m03960 auxin-resistance protein, putative stro... 28 4.9
At5g65760.1 68418.m08275 serine carboxypeptidase S28 family prot... 27 6.5
At4g28395.1 68417.m04064 lipid transfer protein, putative identi... 27 6.5
At4g01680.1 68417.m00218 myb family transcription factor (MYB55) 27 6.5
At3g19650.1 68416.m02490 cyclin-related contains weak similarity... 27 6.5
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 27 8.6
At3g58950.1 68416.m06569 F-box family protein contains F-box dom... 27 8.6
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote... 27 8.6
>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
identical to SP|Q96291 2-cys peroxiredoxin BAS1,
chloroplast precursor {Arabidopsis thaliana}; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 266
Score = 171 bits (417), Expect = 2e-43
Identities = 85/147 (57%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Frame = +2
Query: 110 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKA 286
+PL K AP F+A AV + EF + LSDY GK YV+LFFYPLDFTFVCPTEI AFS++
Sbjct: 72 LPLVGNK-APDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRH 130
Query: 287 DEFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEET 466
EF K+ EVLG S DS F+HLAW+ T RK GGLG +N PLISD + IS+ +GVL +
Sbjct: 131 SEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQ 190
Query: 467 GIPFRGLFIIDDKQNLRQITINDLPVG 547
GI RGLFIID + ++ TIN+L +G
Sbjct: 191 GIALRGLFIIDKEGVIQHSTINNLGIG 217
>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
very strong similarity to SP|Q96291 2-cys peroxiredoxin
BAS1, chloroplast precursor {Arabidopsis thaliana};
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 273
Score = 169 bits (412), Expect = 8e-43
Identities = 83/147 (56%), Positives = 106/147 (72%), Gaps = 1/147 (0%)
Frame = +2
Query: 110 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKA 286
+PL K AP F+A AV + EF + LS+Y GK YV+LFFYPLDFTFVCPTEI AFS++
Sbjct: 79 LPLVGNK-APDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRY 137
Query: 287 DEFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEET 466
+EF K+ EVLG S DS F+HLAW+ T RK GGLG +N PL+SD + IS+ +GVL +
Sbjct: 138 EEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQ 197
Query: 467 GIPFRGLFIIDDKQNLRQITINDLPVG 547
GI RGLFIID + ++ TIN+L +G
Sbjct: 198 GIALRGLFIIDKEGVIQHSTINNLGIG 224
>At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to
peroxiredoxin Q [Sedum lineare] GI:6899842; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 216
Score = 71.7 bits (168), Expect = 3e-13
Identities = 41/121 (33%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Frame = +2
Query: 176 KDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLA 355
K +SL YKGK VVL+FYP D T C + AF + ++F+K G EV+G S D +H A
Sbjct: 86 KPVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSASHKA 145
Query: 356 WINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG-IPFRGLFIIDDKQNLRQITIN 532
+ + + + L+SD+ +++ +D+GV + G +P R +++ DK + Q+ N
Sbjct: 146 FASKYK-------LPYTLLSDEGNKVRKDWGVPGDLFGALPGRQTYVL-DKNGVVQLIYN 197
Query: 533 D 535
+
Sbjct: 198 N 198
>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
identical to peroxiredoxin (Rehydrin homolog)
[Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
and thiol-specific antioxidant) family
Length = 216
Score = 61.7 bits (143), Expect = 3e-10
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +2
Query: 188 LSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCEVLGASTDSHFTHLAWIN 364
L DY + VLF +P DFT VC TE+ A ++ A EF K G ++LG S D +H WI
Sbjct: 24 LHDYFANSWTVLFSHPGDFTPVCTTELGAMAKYAHEFDKRGVKLLGLSCDDVQSHKDWIK 83
Query: 365 TPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLR 517
+N P+I+D + I ++D P R L I+ ++
Sbjct: 84 DIEAFNHGSKVNYPIIADPNKEIIPQLNMIDPIENGPSRALHIVGPDSKIK 134
>At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol
specific antioxidant (AhpC/TSA)/mal allergen family
protein identical to SP|Q9M7T0 Putative peroxiredoxin,
mitochondrial precursor {Arabidopsis thaliana}; similar
to thioredoxin peroxidase [Capsicum annuum] GI:18654477;
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 201
Score = 34.3 bits (75), Expect = 0.057
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 161 VNGEFKDISLSD-YKGKYVVLFFYPLDFTFVCPTE-IIAFSEKADEFRKIGCE-VLGAST 331
V+ +F LSD +KGK VV+F P +T VC + + ++ D+F+ G + V+ S
Sbjct: 58 VSSKFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSV 117
Query: 332 DSHFTHLAW 358
+ F W
Sbjct: 118 NDPFAINGW 126
>At1g80910.1 68414.m09493 expressed protein
Length = 497
Score = 33.9 bits (74), Expect = 0.075
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +2
Query: 179 DISLSDYKGKYV--VLFFYPLDFTFVCPTEIIAFSEKADEFRKI-----GCEVLGASTDS 337
D+ ++G+ + +LFFYP D TF +I SE F ++ CEV+ A S
Sbjct: 19 DLRRGQHEGQELDKILFFYPPDLTFSTQLSVIGLSEGLITFTRLFSPEAACEVIEAERHS 78
Query: 338 H 340
H
Sbjct: 79 H 79
>At1g16020.2 68414.m01922 expressed protein
Length = 502
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +2
Query: 215 VLFFYPLDFTFVCPTEIIAFSEKADEFRKI-----GCEVLGASTDSH 340
+LFFYP D F +I SE F ++ CEV+ A SH
Sbjct: 31 ILFFYPADLDFSTQLSVIGLSEGLITFTRLFSPEAACEVIEAERHSH 77
>At1g16020.1 68414.m01921 expressed protein
Length = 515
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +2
Query: 215 VLFFYPLDFTFVCPTEIIAFSEKADEFRKI-----GCEVLGASTDSH 340
+LFFYP D F +I SE F ++ CEV+ A SH
Sbjct: 31 ILFFYPADLDFSTQLSVIGLSEGLITFTRLFSPEAACEVIEAERHSH 77
>At1g57560.1 68414.m06531 myb family transcription factor (MYB50)
similar to DNA-binding protein GI:19058 from [Hordeum
vulgare]
Length = 314
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 479 GRGCPSPRPALRSRERCGATCRL 411
G GC S P L ERCG +CRL
Sbjct: 33 GHGCWSSVPKLAGLERCGKSCRL 55
>At5g57370.1 68418.m07168 expressed protein low similarity to
nucleic acid binding protein [Homo sapiens] GI:431953
Length = 219
Score = 30.7 bits (66), Expect = 0.70
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 382 RTRSHEHSSDKRQV-APHLSRLRSAGRGDGHPLPRTLHHRRQA-EPQADHHQRPARG 546
R+R+ +H + R V +P R RS R HHRR++ P A +RP +G
Sbjct: 54 RSRTPDHHARARHVRSPERYRSRSRSIDRDRDRDRQRHHRRRSPSPDAPSRKRPRQG 110
>At5g26660.1 68418.m03174 myb family transcription factor (MYB4)
(MYB86) contains Pfam profile: PF00249 myb-like
DNA-binding domain; identical to cDNA putative
transcription factor (MYB86) mRNA, partial cds
GI:3941517
Length = 352
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 479 GRGCPSPRPALRSRERCGATCRL 411
G GC S P L +RCG +CRL
Sbjct: 33 GHGCWSSVPKLAGLQRCGKSCRL 55
>At1g09540.1 68414.m01070 myb family transcription factor (MYB61)
contains PFAM profile: myb DNA-binding domain PF00249
Length = 366
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 479 GRGCPSPRPALRSRERCGATCRL 411
G GC S P L +RCG +CRL
Sbjct: 33 GHGCWSSVPKLAGLQRCGKSCRL 55
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = +1
Query: 382 RTRSHEHSSDKRQVAP-HLSRLRSAGRGDGHPLPRTLHHRRQAEP----QADHHQRPARG 546
R R+H H+ +RQ P +R +AG+ HHRR Q HH+R
Sbjct: 77 RRRNHHHNDHRRQPPPLPENRAATAGQPPSPSPDNHRHHRRTTTAAVAGQPPHHRRTTAA 136
Query: 547 GG 552
G
Sbjct: 137 AG 138
>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
(Ath-A) identical to gi:2827141
Length = 1084
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 463 DGHPLPRTLHHRRQAEPQADHHQR 534
DG+ LPR ++ R+ P DHH++
Sbjct: 516 DGNELPRLVYVSREKRPGFDHHKK 539
>At3g62170.1 68416.m06985 pectinesterase family protein contains
Pfam profiles: PF01095 pectinesterase, PF04043 plant
invertase/pectin methylesterase inhibitor ;similar to
pollen-specific pectin esterase GI:1620652 from
[Brassica rapa subsp. pekinensis]
Length = 588
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 214 NIFPLVVRQRNVLELSVDDGRGLELGSGFGHLQRHLVETKD 92
+IF VV + + VDD + + +G+G G R L+E D
Sbjct: 192 DIFHSVVTAMAQMGVKVDDMKNITMGAGAGGAARRLLEDND 232
>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
putative similar to gi:2827141 cellulose synthase
catalytic subunit, Arabidopsis thaliana (Ath-A)
Length = 1088
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 463 DGHPLPRTLHHRRQAEPQADHHQR 534
DG+ LPR ++ R+ P DHH++
Sbjct: 521 DGNELPRLVYVSREKRPGFDHHKK 544
>At4g16146.1 68417.m02449 expressed protein
Length = 102
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 374 KQGGLGPMNIPLISDKSHRI---SRDYGVLDEETGIPFRGLFIID 499
K GGL P PLIS S R S D+ +L +E I R + I+
Sbjct: 25 KYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQRTIAAIE 69
>At2g32410.1 68415.m03960 auxin-resistance protein, putative strong
similarity to SP|P42744 Auxin-resistance protein AXR1
{Arabidopsis thaliana}; contains Pfam profile PF00899:
ThiF family
Length = 523
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 16 SRSDCHFYFKSESFSGAFGFRLLFKSL 96
S ++ H Y E++SGA GF +L +++
Sbjct: 394 STTELHKYLADENYSGAIGFYILLRAV 420
>At5g65760.1 68418.m08275 serine carboxypeptidase S28 family protein
similar to SP|P42785 Lysosomal Pro-X carboxypeptidase
precursor (EC 3.4.16.2) (Prolylcarboxypeptidase) (PRCP)
(Proline carboxypeptidase) {Homo sapiens}; contains Pfam
profile PF05577: Serine carboxypeptidase S28
Length = 515
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 47 ASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE 172
ASH +L +F +++ VF N L +K P+F N E
Sbjct: 2 ASHFCLLLIFTFFTLVFPSNGSSLSSSKLLPRFPRYTFQNRE 43
>At4g28395.1 68417.m04064 lipid transfer protein, putative identical
to anther-specific gene ATA7 [gi:2746339]; contains Pfam
protease inhibitor/seed storage/LTP family domain
Length = 180
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 432 MRCDLSLIRGMFMGPSPPCLRGVLIQARCVKCES 331
M C + + G+F PSP C RGV VK S
Sbjct: 77 MPC-MGFVEGIFQQPSPDCCRGVTHLNNVVKFTS 109
>At4g01680.1 68417.m00218 myb family transcription factor (MYB55)
Length = 336
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 479 GRGCPSPRPALRSRERCGATCRL 411
G GC S P +RCG +CRL
Sbjct: 33 GHGCWSSVPKQAGLQRCGKSCRL 55
>At3g19650.1 68416.m02490 cyclin-related contains weak similarity to
Cylicin I (Multiple-band polypeptide I)
(Swiss-Prot:P35662) [Bos taurus]
Length = 302
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 358 DQHAAQAGRTRSHEHSSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 537
D H ++ + H + + APHLS++ + P + H R+++ + D +RP
Sbjct: 69 DAHGSRKDSEKKHSGHHETTKAAPHLSQVPRS-------RPYSQHDDRRSDGKVD--RRP 119
Query: 538 ARGGGRWR 561
G WR
Sbjct: 120 TSVRGSWR 127
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 463 DGHPLPRTLHHRRQAEPQADHHQR 534
+GH LPR ++ R+ P HH++
Sbjct: 477 EGHELPRLVYVSREKRPGFQHHKK 500
>At3g58950.1 68416.m06569 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 396 MGPSPPCLRGVLIQARCVKCESVEAPSTSQPILRNSS 286
+GP P L+ ++I + ++C+++E + P+L S
Sbjct: 99 LGPVLPMLKTLIIDSAWIRCDTIETFLPTFPVLEELS 135
>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor protein
kinase-like protein GI:10177178 from [Arabidopsis
thaliana]
Length = 1045
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 396 MGPSP---PCLRGVLIQARCVKCESVEAPSTSQPILRNSSA 283
+ PSP P ++ V+ VKC E TSQP+++ SS+
Sbjct: 1005 VNPSPVERPTMKEVVTLLMEVKCSPEEWGKTSQPLIKPSSS 1045
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,962,429
Number of Sequences: 28952
Number of extensions: 218912
Number of successful extensions: 796
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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