Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0298
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.2  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.7  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 612 IPPLLYSILNPETNSLSPS 556
           +PP+   I+NP+    SPS
Sbjct: 409 VPPMQSQIINPQPQITSPS 427


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 239 ICFNLGILFFLCLTSLGVYIVII 307
           I FN+ +LF LCL    ++++ +
Sbjct: 187 IFFNMHLLFLLCLDYFTLHLLFL 209



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 224 YIYNLICFNLGILFFLCL 277
           + Y  I F + +LF LC+
Sbjct: 116 FYYAFIIFTVHLLFLLCI 133


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 579 LDLILNIEEGG 611
           LDL+LN E GG
Sbjct: 156 LDLVLNSESGG 166


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 579 LDLILNIEEGG 611
           LDL+LN E GG
Sbjct: 156 LDLVLNSESGG 166


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 579 LDLILNIEEGG 611
           LDL+LN E GG
Sbjct: 156 LDLVLNSESGG 166


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 579 LDLILNIEEGG 611
           LDL+LN E GG
Sbjct: 156 LDLVLNSESGG 166


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 579 LDLILNIEEGG 611
           LDL+LN E GG
Sbjct: 156 LDLVLNSESGG 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,674
Number of Sequences: 336
Number of extensions: 1410
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)