Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0298
         (701 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118281-1|AAM48310.1|  276|Drosophila melanogaster AT13922p pro...    29   8.1  
AF148686-1|AAD45272.1|  276|Drosophila melanogaster Kruppel homo...    29   8.1  
AE014134-1046|AAF52341.1|  276|Drosophila melanogaster CG9159-PA...    29   8.1  

>AY118281-1|AAM48310.1|  276|Drosophila melanogaster AT13922p
           protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 645 YLNIQPKKLKQIPPLLYSILNPETNSL 565
           + NI+P  L  IP LLYS+L+  + SL
Sbjct: 127 FFNIRPSLLVLIPVLLYSVLHASSYSL 153


>AF148686-1|AAD45272.1|  276|Drosophila melanogaster Kruppel homolog
           protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 645 YLNIQPKKLKQIPPLLYSILNPETNSL 565
           + NI+P  L  IP LLYS+L+  + SL
Sbjct: 127 FFNIRPSLLVLIPVLLYSVLHASSYSL 153


>AE014134-1046|AAF52341.1|  276|Drosophila melanogaster CG9159-PA
           protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 645 YLNIQPKKLKQIPPLLYSILNPETNSL 565
           + NI+P  L  IP LLYS+L+  + SL
Sbjct: 127 FFNIRPSLLVLIPVLLYSVLHASSYSL 153


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,234,487
Number of Sequences: 53049
Number of extensions: 216978
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)