Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0298
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07785.1 68415.m00946 NADH-ubiquinone oxidoreductase, putativ...    84   7e-17
At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar ...    27   9.1  

>At2g07785.1 68415.m00946 NADH-ubiquinone oxidoreductase, putative
           similar to NADH-ubiquinone oxidoreductase chain 1 (EC
           1.6.5.3) (Swiss-Prot:Q01300) [Petunia hybrida]
          Length = 99

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
 Frame = +2

Query: 35  LGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXX 214
           + ++Q RKGP+ VG  GLLQP +D  KL  KE   P+ +N+F +  +PV  F+       
Sbjct: 1   MAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFRMAPVATFMLSLVARA 60

Query: 215 XIPYIYNLICF--NLGILFFLCLTSLGVYIVIIAGWSSN 325
            +P+ Y ++    N+G+L+   ++SLGVY +IIAG SSN
Sbjct: 61  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGRSSN 99


>At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar to
           beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and
           GI:8918271 from [Pisum sativum]
          Length = 769

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 636 IQPKKLKQ-IPPLLYSILNPETNSLSPSAKSKGVRFVSA 523
           ++ KK +Q IPP      N  T+ ++ +A  KGV F+SA
Sbjct: 70  LKEKKFEQVIPPAKVEDANNITSEIATNALRKGVNFLSA 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,141,846
Number of Sequences: 28952
Number of extensions: 112230
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)