Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0296
         (746 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.   221   2e-59
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.   221   2e-59
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.   221   2e-59
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.   221   2e-59
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    28   0.27 
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           27   0.81 
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    24   4.3  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    24   4.3  
Z32645-2|CAA83568.1|  259|Anopheles gambiae chymotrypsin-like pr...    24   5.7  
Z18887-1|CAA79325.1|  259|Anopheles gambiae chymotrypsin 1 protein.    24   5.7  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    24   5.7  
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          23   7.6  

>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score =  221 bits (540), Expect = 2e-59
 Identities = 101/106 (95%), Positives = 104/106 (98%)
 Frame = +1

Query: 4   LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
           LS+HQLVENTDETYCIDNEALYDICFRTLK+  P+YGDLNHLVSLTMSGVTTCLRFPGQL
Sbjct: 83  LSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGDLNHLVSLTMSGVTTCLRFPGQL 142

Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ 321
           NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ
Sbjct: 143 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ 188


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score =  221 bits (540), Expect = 2e-59
 Identities = 101/106 (95%), Positives = 104/106 (98%)
 Frame = +1

Query: 4   LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
           LS+HQLVENTDETYCIDNEALYDICFRTLK+  P+YGDLNHLVSLTMSGVTTCLRFPGQL
Sbjct: 83  LSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGDLNHLVSLTMSGVTTCLRFPGQL 142

Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ 321
           NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ
Sbjct: 143 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ 188


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score =  221 bits (540), Expect = 2e-59
 Identities = 101/106 (95%), Positives = 104/106 (98%)
 Frame = +1

Query: 4   LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
           LS+HQLVENTDETYCIDNEALYDICFRTLK+  P+YGDLNHLVSLTMSGVTTCLRFPGQL
Sbjct: 83  LSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGDLNHLVSLTMSGVTTCLRFPGQL 142

Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ 321
           NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ
Sbjct: 143 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ 188


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score =  221 bits (540), Expect = 2e-59
 Identities = 101/106 (95%), Positives = 104/106 (98%)
 Frame = +1

Query: 4   LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
           LS+HQLVENTDETYCIDNEALYDICFRTLK+  P+YGDLNHLVSLTMSGVTTCLRFPGQL
Sbjct: 83  LSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGDLNHLVSLTMSGVTTCLRFPGQL 142

Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ 321
           NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ
Sbjct: 143 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQ 188


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 28.3 bits (60), Expect = 0.27
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +3

Query: 27   KHRRNL----LYRQRGSLRYL--LPHAKTIHTHIRRPEPPGVADHVRRDDVPAVPRTAER 188
            +H R L    LYRQR     L  +PH +   +     E   +   +RR ++  + RTA R
Sbjct: 1136 RHERRLYLQRLYRQRAREGTLPTVPHGRNRRSRSAPSEADTIRRRMRRREMERLRRTARR 1195

Query: 189  RPAQAG 206
             P+  G
Sbjct: 1196 VPSNQG 1201


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 26.6 bits (56), Expect = 0.81
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 710 YSETRSFMLLSASVNSISSMPSPVYQCKKALR-LNIAVN 597
           + +TR+  +L  S N+I S+P  ++     LR LNI+ N
Sbjct: 167 FGQTRNLEVLDLSTNNIWSLPDHLFCSLSGLRSLNISSN 205


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 245  MKKCRRGKGTMLTASLRRSAFSCPGNRRHVVTPDMV 138
            M  C+   G+ L+ S   S FS PG R   +TP  V
Sbjct: 1339 MSPCKPTNGS-LSPSATHSRFSTPGARSLPLTPPSV 1373


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 245  MKKCRRGKGTMLTASLRRSAFSCPGNRRHVVTPDMV 138
            M  C+   G+ L+ S   S FS PG R   +TP  V
Sbjct: 1336 MSPCKPTNGS-LSPSATHSRFSTPGARSLPLTPPSV 1370


>Z32645-2|CAA83568.1|  259|Anopheles gambiae chymotrypsin-like
           protease ANCHYM1 protein.
          Length = 259

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 103 PTYGDLNHLVSLTMSGVTTC 162
           P Y D+ HL +LT +G   C
Sbjct: 189 PGYTDVGHLCTLTKTGEGAC 208


>Z18887-1|CAA79325.1|  259|Anopheles gambiae chymotrypsin 1 protein.
          Length = 259

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 103 PTYGDLNHLVSLTMSGVTTC 162
           P Y D+ HL +LT +G   C
Sbjct: 189 PGYTDVGHLCTLTKTGEGAC 208


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 690 ERPCLRVPTVPGGHRRRGR 746
           +RP    PTV GGHR   +
Sbjct: 48  QRPLAPAPTVLGGHRANAK 66


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = -1

Query: 461 EEFLFWMLSICSSTSFMDMRPRKMAATVR*RPWRGSQAAIMFLASNICCVSSGTVSARYC 282
           E F   +LS  +    ++   R +   VR   + G +     L+ +   V S   + RY 
Sbjct: 348 ERFCLGLLSNVNRNEVVEQTRRHIGKGVR-LYYIGGEVFAECLSDSSIFVQSPNCNQRYG 406

Query: 281 WLPRDVSGAKPG 246
           W P  V    PG
Sbjct: 407 WHPATVCKIPPG 418


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,787
Number of Sequences: 2352
Number of extensions: 13129
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)