Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0296
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 468 e-132
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 467 e-132
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 466 e-132
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 466 e-132
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 463 e-131
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 461 e-130
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 459 e-129
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 458 e-129
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 456 e-129
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 227 5e-60
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 222 2e-58
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 222 2e-58
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 218 4e-57
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 218 4e-57
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 218 4e-57
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 163 8e-41
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 130 7e-31
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 130 1e-30
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR... 36 0.029
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR... 36 0.029
At4g00220.1 68417.m00023 LOB domain protein 30 / lateral organ b... 33 0.20
At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF0051... 31 0.61
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 31 0.81
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 31 0.81
At2g24340.1 68415.m02909 hypothetical protein 31 1.1
At5g55570.1 68418.m06927 expressed protein 29 4.3
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 28 5.7
At4g24240.1 68417.m03479 WRKY family transcription factor contai... 28 5.7
At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containi... 28 7.6
At1g26890.1 68414.m03279 hypothetical protein 28 7.6
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ... 27 10.0
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 27 10.0
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 27 10.0
At1g72270.1 68414.m08355 expressed protein 27 10.0
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 468 bits (1153), Expect = e-132
Identities = 211/247 (85%), Positives = 234/247 (94%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LSVHQLVEN DE +DNEALYDICFRTLKL+TP++GDLNHL+S TMSGVT CLRFPGQL
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPR
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPR 306
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAAT 543
HGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+T
Sbjct: 307 HGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMAST 366
Query: 544 FIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 723
FIGNST+IQE+F+R+SEQFTAMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 367 FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 724 EATADED 744
+ATADE+
Sbjct: 427 DATADEE 433
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 467 bits (1152), Expect = e-132
Identities = 212/247 (85%), Positives = 233/247 (94%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LSVHQLVEN DE +DNEALYDICFRTLKLSTP++GDLNHL+S TMSGVT CLRFPGQL
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYR LTVPELTQQM+DAKNMM A DPR
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPR 306
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAAT 543
HGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+T
Sbjct: 307 HGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMAST 366
Query: 544 FIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 723
FIGNST+IQE+F+R+SEQFTAMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 367 FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 724 EATADED 744
+ATADE+
Sbjct: 427 DATADEE 433
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 466 bits (1149), Expect = e-132
Identities = 210/247 (85%), Positives = 234/247 (94%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LSVHQLVEN DE +DNEALYDICFRTLKL+TP++GDLNHL+S TMSGVT CLRFPGQL
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYR+LTVPELTQQM+D+KNMM A DPR
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPR 306
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAAT 543
HGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+T
Sbjct: 307 HGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMAST 366
Query: 544 FIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 723
FIGNST+IQE+F+R+SEQFTAMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 367 FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 724 EATADED 744
+ATADE+
Sbjct: 427 DATADEE 433
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 466 bits (1149), Expect = e-132
Identities = 210/247 (85%), Positives = 234/247 (94%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LSVHQLVEN DE +DNEALYDICFRTLKL+TP++GDLNHL+S TMSGVT CLRFPGQL
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYR+LTVPELTQQM+D+KNMM A DPR
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPR 306
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAAT 543
HGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+T
Sbjct: 307 HGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMAST 366
Query: 544 FIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 723
FIGNST+IQE+F+R+SEQFTAMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 367 FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 724 EATADED 744
+ATADE+
Sbjct: 427 DATADEE 433
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 463 bits (1141), Expect = e-131
Identities = 208/247 (84%), Positives = 234/247 (94%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LSVHQLVEN DE +DNEALYDICFRTLKL+TP++GDLNHL+S TMSGVT CLRFPGQL
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPR
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPR 306
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAAT 543
HGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDI PRGL MA+T
Sbjct: 307 HGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMAST 366
Query: 544 FIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 723
FIGNST+IQE+F+R+SEQFTAMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 367 FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
Query: 724 EATADED 744
+ATAD++
Sbjct: 427 DATADDE 433
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 461 bits (1136), Expect = e-130
Identities = 209/247 (84%), Positives = 234/247 (94%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LSVHQLVEN DE +DNEALYDICFRTLKLSTP++GDLNHL+S TMSGVT LRFPGQL
Sbjct: 188 LSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQL 247
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQY +LTVPELTQQM+D+KNMM A DPR
Sbjct: 248 NSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSKNMMCAADPR 307
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAAT 543
HGRYLT +AIFRG+MS KEVDEQ+LNIQNKNSSYFVEWIPNNVK++VCDIPP+GLKMAAT
Sbjct: 308 HGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAAT 367
Query: 544 FIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 723
F+GNST+IQE+F+R+SEQFTAMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ
Sbjct: 368 FVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 427
Query: 724 EATADED 744
+ATADE+
Sbjct: 428 DATADEE 434
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 459 bits (1131), Expect = e-129
Identities = 207/247 (83%), Positives = 233/247 (94%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LSVHQLVEN DE +DNEALYDICFRTLKLSTP++GDLNHL+S TMSGVT LRFPGQL
Sbjct: 188 LSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCSLRFPGQL 247
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQY +LTVPELTQQM+DAKNMM A DPR
Sbjct: 248 NSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPR 307
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAAT 543
HGRYLT +A+FRG+MS KEVDEQ+LN+QNKNSSYFVEWIPNNVK++VCDIPP G+KMA+T
Sbjct: 308 HGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMAST 367
Query: 544 FIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 723
F+GNST+IQE+F+R+SEQFTAMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct: 368 FVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 427
Query: 724 EATADED 744
+ATADE+
Sbjct: 428 DATADEE 434
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 458 bits (1128), Expect = e-129
Identities = 206/247 (83%), Positives = 232/247 (93%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LSVHQLVEN DE +DNEALYDICFRTLKL+ PT+GDLNHL+S TMSGVT CLRFPGQL
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQY AL+VPELTQQM+DAKNMM A DPR
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPR 306
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAAT 543
HGRYLT +A+FRG++S KEVDEQM+NIQNKNSSYFVEWIPNNVK++VCDI P+GLKMA+T
Sbjct: 307 HGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMAST 366
Query: 544 FIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 723
FIGNST+IQE+F+R+SEQFTAMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ
Sbjct: 367 FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 426
Query: 724 EATADED 744
+ATA E+
Sbjct: 427 DATAGEE 433
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 456 bits (1123), Expect = e-129
Identities = 205/247 (82%), Positives = 230/247 (93%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LSVHQLVEN DE +DNEALYDICFRTLKL+ PT+GDLNHL+S TMSGVT CLRFPGQL
Sbjct: 187 LSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQL 246
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQY AL+VPELTQQM+DAKNMM A DPR
Sbjct: 247 NSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPR 306
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAAT 543
HGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDI P GLKMA+T
Sbjct: 307 HGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMAST 366
Query: 544 FIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 723
FIGNST+IQE+F+R+SEQFTAMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ
Sbjct: 367 FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQ 426
Query: 724 EATADED 744
+AT E+
Sbjct: 427 DATVGEE 433
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 227 bits (556), Expect = 5e-60
Identities = 102/255 (40%), Positives = 157/255 (61%), Gaps = 8/255 (3%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LS H L+E+TD +DNEA+YDIC R+L + PTY +LN L+S T+S +TT LRF G +
Sbjct: 189 LSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRLISQTISSLTTSLRFDGAI 248
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N D+ + N+VP+PR+HF + +AP+ S + +VPE+T +F+ NMMA CDPR
Sbjct: 249 NVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPR 308
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP-------- 519
HG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 309 HGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDL 368
Query: 520 RGLKMAATFIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDL 699
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 369 AKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 700 VSEYQQYQEATADED 744
+Y++ A++D
Sbjct: 429 EKDYEEVGGEGAEDD 443
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 222 bits (543), Expect = 2e-58
Identities = 100/255 (39%), Positives = 156/255 (61%), Gaps = 8/255 (3%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LS H L+E+TD +DNEA+YDIC R+L + PTY +LN L+S +S +TT LRF G +
Sbjct: 189 LSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAI 248
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +MMA CDPR
Sbjct: 249 NVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPR 308
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP-------- 519
HG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 309 HGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDL 368
Query: 520 RGLKMAATFIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDL 699
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 369 AKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 700 VSEYQQYQEATADED 744
+Y++ D++
Sbjct: 429 EKDYEEVGAEGGDDE 443
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 222 bits (543), Expect = 2e-58
Identities = 100/255 (39%), Positives = 156/255 (61%), Gaps = 8/255 (3%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LS H L+E+TD +DNEA+YDIC R+L + PTY +LN L+S +S +TT LRF G +
Sbjct: 189 LSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAI 248
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N D+ + N+VP+PR+HF + +AP+ S + L+VPE+T +F+ +MMA CDPR
Sbjct: 249 NVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPR 308
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP-------- 519
HG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 309 HGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDL 368
Query: 520 RGLKMAATFIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDL 699
++ A I N+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 369 AKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 700 VSEYQQYQEATADED 744
+Y++ D++
Sbjct: 429 EKDYEEVGAEGGDDE 443
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 218 bits (532), Expect = 4e-57
Identities = 103/256 (40%), Positives = 155/256 (60%), Gaps = 9/256 (3%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T LRF G L
Sbjct: 189 LSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGAL 248
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPR
Sbjct: 249 NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPR 308
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP-------- 519
HG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 309 HGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDL 368
Query: 520 RGLKMAATFIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDL 699
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 369 AKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 700 VSEYQQY-QEATADED 744
+Y++ E DED
Sbjct: 429 EKDYEEVGAEGGDDED 444
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 218 bits (532), Expect = 4e-57
Identities = 103/256 (40%), Positives = 155/256 (60%), Gaps = 9/256 (3%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T LRF G L
Sbjct: 189 LSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGAL 248
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPR
Sbjct: 249 NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPR 308
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP-------- 519
HG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 309 HGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDL 368
Query: 520 RGLKMAATFIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDL 699
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 369 AKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 700 VSEYQQY-QEATADED 744
+Y++ E DED
Sbjct: 429 EKDYEEVGAEGGDDED 444
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 218 bits (532), Expect = 4e-57
Identities = 103/256 (40%), Positives = 155/256 (60%), Gaps = 9/256 (3%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T LRF G L
Sbjct: 189 LSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGAL 248
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPR
Sbjct: 249 NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPR 308
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP-------- 519
HG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 309 HGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDL 368
Query: 520 RGLKMAATFIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDL 699
++ A I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 369 AKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 700 VSEYQQY-QEATADED 744
+Y++ E DED
Sbjct: 429 EKDYEEVGAEGGDDED 444
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 163 bits (397), Expect = 8e-41
Identities = 78/198 (39%), Positives = 117/198 (59%), Gaps = 8/198 (4%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN LVS +S +T LRF G L
Sbjct: 189 LSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGAL 248
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPR 363
N D+ + N+VP+PR+HF + +AP+ S + L+V E+T F+ +MMA CDPR
Sbjct: 249 NVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPR 308
Query: 364 HGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP-------- 519
HG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP
Sbjct: 309 HGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDL 368
Query: 520 RGLKMAATFIGNSTAIQE 573
++ A I NST++ E
Sbjct: 369 AKVQRAVCMISNSTSVAE 386
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 130 bits (315), Expect = 7e-31
Identities = 78/250 (31%), Positives = 129/250 (51%), Gaps = 13/250 (5%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
L++ +L N D +DN AL I L L+ PT+ N LVS MS TT LR+PG +
Sbjct: 190 LTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYM 249
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLT-SRGSQQYRALTVPELTQQMFDAKNMMAACDP 360
N DL L +++P PR HF M G+ PLT R + R TV ++ +++ KN+M +
Sbjct: 250 NNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYA 309
Query: 361 RH-----GRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP-- 519
R+ +Y+++ I +G + +V E + I+ + F++W P +++ A+ P
Sbjct: 310 RNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYV 369
Query: 520 -RGLKMAATFIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGM----DEMEFTEAES 684
+++ + + T+I+ LF R Q+ + K++AFL Y M D EF E+
Sbjct: 370 QTSHRVSGLMLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRD 429
Query: 685 NMNDLVSEYQ 714
+ LV EY+
Sbjct: 430 IIESLVDEYK 439
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 130 bits (314), Expect = 1e-30
Identities = 78/250 (31%), Positives = 129/250 (51%), Gaps = 13/250 (5%)
Frame = +1
Query: 4 LSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQL 183
L++ +L N D +DN AL I L L+ PT+ N LVS MS TT LR+PG +
Sbjct: 190 LTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYM 249
Query: 184 NADLRKLAVNMVPFPRLHFFMPGFAPLT-SRGSQQYRALTVPELTQQMFDAKNMMAACDP 360
N DL L +++P PR HF M G+ PLT R + R TV ++ +++ KN+M +
Sbjct: 250 NNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYA 309
Query: 361 RH-----GRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP-- 519
R+ +Y+++ I +G + +V E + I+ + F+EW P +++ A+ P
Sbjct: 310 RNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYV 369
Query: 520 -RGLKMAATFIGNSTAIQELFKRISEQFTAMFKRKAFLHWYTGEGM----DEMEFTEAES 684
+++ + + T+I+ LF + Q+ + K++AFL Y M D EF E+
Sbjct: 370 QTAHRVSGLMLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRD 429
Query: 685 NMNDLVSEYQ 714
+ LV EY+
Sbjct: 430 IIESLVDEYK 439
>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1298
Score = 35.9 bits (79), Expect = 0.029
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +1
Query: 7 SVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPG-QL 183
++ LVE + ++N DIC+ S PT +L LVSL + G + RFP
Sbjct: 819 NIPNLVELSSSFQNLNNLERLDICYCRNLESLPTGINLESLVSLNLFGCSRLKRFPDIST 878
Query: 184 N---ADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 303
N DL + + VP+ +FF LT +G ++ + +++
Sbjct: 879 NIKYLDLDQTGIEEVPWQIENFF--NLTKLTMKGCRELKCVSL 919
>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1353
Score = 35.9 bits (79), Expect = 0.029
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +1
Query: 7 SVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPG-QL 183
++ LVE + ++N DIC+ S PT +L LVSL + G + RFP
Sbjct: 780 NIPNLVELSSSFQNLNNLERLDICYCRNLESLPTGINLESLVSLNLFGCSRLKRFPDIST 839
Query: 184 N---ADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTV 303
N DL + + VP+ +FF LT +G ++ + +++
Sbjct: 840 NIKYLDLDQTGIEEVPWQIENFF--NLTKLTMKGCRELKCVSL 880
>At4g00220.1 68417.m00023 LOB domain protein 30 / lateral organ
boundaries domain protein 30 (LBD30) identical to LOB
DOMAIN 30 [Arabidopsis thaliana] GI:16660632; supported
by full-length cDNA gi:16660631
Length = 228
Score = 33.1 bits (72), Expect = 0.20
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Frame = +1
Query: 58 EALYDICFRT-LKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRL 234
+A+ ICF +L P YG ++H+VSL V+ +L+ LA +P P+
Sbjct: 73 DAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVS----LQTELSYLQAHLATLELPQPQ- 127
Query: 235 HFFMPGFAPLTSRGSQQYRALT-VPELTQQMFDAKNM 342
P P++S GS Q ++T +P ++ ++D ++
Sbjct: 128 ----PPQVPVSSSGSLQALSITDLPTISPSVYDLSSI 160
>At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF00515:
TPR Domain; similar to ferredoxin PetF2 (GI:22651984)
[Synechococcus sp. PCC 7002]
Length = 366
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 281 WLPRDVSGAKPGMKKCRRGKGTMLTASLRRSAFSCPG-NRRHVVTPDMVSDTRW 123
W+ R SGAK MK +G+ + S R F+C G R + V +M+ W
Sbjct: 40 WIVRTQSGAKTCMKSKAKGRCVICHGSGRVDCFNCCGKGRTNCVDVEMLPRGEW 93
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 31.1 bits (67), Expect = 0.81
Identities = 22/81 (27%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Frame = +3
Query: 81 PHAKTIHTHIRRPEPPGVADHVRRDDVPAVPRTAERR---PAQAGGQHGXXXXXXXXXXX 251
P T H RR PP H R PA+ RR PA G H
Sbjct: 13 PPLATTAGHHRRSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPSIPVTT 72
Query: 252 XXXXDVTRQPAVPRAHRAGAH 314
R P+ P +G H
Sbjct: 73 NTGHRHCRPPSNPATTNSGHH 93
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 31.1 bits (67), Expect = 0.81
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
Frame = +1
Query: 115 DLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRA 294
+L++L+ L MSG T FP +N K +N+ RL F ++ Q
Sbjct: 813 NLHNLIELDMSGCTNLETFPTGINLQSLK-RINLARCSRLKIFPDISTNISELDLSQTAI 871
Query: 295 LTVPELTQQMFDAKNM-MAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFV 471
VP + K + M C+ +L ++ + +K VD I +K Y +
Sbjct: 872 EEVPLWIENFSKLKYLIMGKCNMLEYVFLNISKL----KHLKSVDFSDCGILSKADMYML 927
Query: 472 EWIPNNVKTAV 504
+ +PN +++
Sbjct: 928 Q-VPNEASSSL 937
>At2g24340.1 68415.m02909 hypothetical protein
Length = 322
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +1
Query: 409 SMKEVDEQMLNIQNKNSSYFVEWIPNNVKT-----AVCDIPPRGLKMAATFIGNSTAIQE 573
+MK + +N+ NKN+ E + N + T + GLK+ AT G T + E
Sbjct: 143 AMKGFYYEFMNLDNKNAFNNDENLNNLMITFTNLGGASNANESGLKIGATTSGVKTKVDE 202
Query: 574 LFKRISEQFTAMFKRKAFLHWYT 642
+ + + +F+HW T
Sbjct: 203 DIEPLCRHYKCATMDSSFIHWIT 225
>At5g55570.1 68418.m06927 expressed protein
Length = 143
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 332 ASNICCVSS-GTVSARYCWLPRDVSGAKPGMKKCRRGKGTMLTASLRR 192
AS++C V S TV +R + PG ++ R G G M+T S RR
Sbjct: 6 ASSLCRVPSLWTVRSRPRQIKSTAGFVSPGRRRSRGGGGGMMTMSNRR 53
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 634 WYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADED 744
W+TGE ++ EF E +++ D + E + E DED
Sbjct: 293 WFTGEAIEGEEF-EIDNDDEDDIDEDEDEDEEDEDED 328
>At4g24240.1 68417.m03479 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 353
Score = 28.3 bits (60), Expect = 5.7
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = -1
Query: 428 SSTSFMDMRPRKMAATVR*RPWRGSQAAIMFLASNICCVSSGTVSARYCWL-PRDVSGAK 252
SS+S M +T+ P A F++S+ C S +S+ + + P +SG+
Sbjct: 172 SSSSSPPMLANGAPSTINFAPSPPVSATNSFMSSHRCDTDSTHMSSGFEFTNPSQLSGS- 230
Query: 251 PGMKKCRRGKGTMLTASLRRSAFSCPGNRRH 159
RGK + +ASL+R S P +R H
Sbjct: 231 -------RGKPPLSSASLKRRCNSSPSSRCH 254
>At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 506
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 459 LILRGMDPQQREDRRVRHSSSWSQDGRHLHRKLHR 563
+ILRG+ + R + ++ W +G HL++ +R
Sbjct: 378 VILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYR 412
>At1g26890.1 68414.m03279 hypothetical protein
Length = 280
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 85 TLKLSTPTYGDLNHLVSLTMSG-VTTCLRFPGQLNADLRKLAVNMVPFPRLHF 240
TL L Y D LVSL S V CL+ + +L K V + +LH+
Sbjct: 110 TLSLRFVVYKDEESLVSLLSSSPVLNCLKVDRHKDDNLTKFTVKVSTLKQLHY 162
>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1705
Score = 27.5 bits (58), Expect = 10.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 313 TQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSY 465
T +D+K + C+ R L V A RG + DE+++N+ NKNS +
Sbjct: 910 TNPYYDSKVVGKYCEKRDPT-LAVVAYRRG-----QCDEELINVTNKNSLF 954
>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1703
Score = 27.5 bits (58), Expect = 10.0
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 313 TQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSY 465
T +D+K + C+ R L V A RG + DE+++N+ NKNS +
Sbjct: 910 TNPYYDSKVVGKYCEKRDPT-LAVVAYRRG-----QCDEELINVTNKNSLF 954
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 27.5 bits (58), Expect = 10.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 194 RSAFSCPGNRRHVVTPDMVSDTRWFRSPYVGVDSFSVRKQIS 69
++ F C +TP+ +TR+ RSPY F K +S
Sbjct: 232 KATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASKALS 273
>At1g72270.1 68414.m08355 expressed protein
Length = 2777
Score = 27.5 bits (58), Expect = 10.0
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Frame = +1
Query: 427 EQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTA 606
EQ++ I + V + +V VC P GL A GN + L K + T
Sbjct: 680 EQLVIISEREDGGIVNELAYDVLVKVCTDPSNGLMPDAYRKGNIKRLLALMKSLKATETG 739
Query: 607 MFKRKAFLHWYTGE-GMDEMEFTEAESNMNDLVSEY 711
+ R L G + F E N+ D S Y
Sbjct: 740 -YPRDLLLAIIRGRPSLASAFFDEFPYNVEDFTSPY 774
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,111,943
Number of Sequences: 28952
Number of extensions: 257669
Number of successful extensions: 951
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -